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The map label for this gene is yraI [H]

Identifier: 209400854

GI number: 209400854

Start: 4132734

End: 4133408

Strand: Direct

Name: yraI [H]

Synonym: ECH74115_4461

Alternate gene names: 209400854

Gene position: 4132734-4133408 (Clockwise)

Preceding gene: 209398626

Following gene: 209400215

Centisome position: 74.17

GC content: 44.15

Gene sequence:

>675_bases
ATGATATTTACCTTGTTGTGTAGCTTCTGTATCGGCCAGGCGCTTGCAGGGGGTATCGTTTTACAGCGAACGCGAGTGAT
CTATGATGCCAGCCGCAAAGAGGCTGCGTTACCTGTCGCAAACAAAGGCGCAGAAACACCTTATTTACTGCAATCATGGG
TAGATAATATAGATGGTACAAGCCGTGCCCCATTTATTATAACCCCACCGCTAATTCGTCTTGAAGCTGGCGATGATTCA
TCACTGCGAATTATTAAAACAGCTGATAACCTGCCTGAAAATAAAGAGTCGCTGTTCTACATTAATGTTCGTGCCATTCC
AGCAAAGAAAAAATCAGATGATGTTAATGCTAACGAGTTGACGCTGGTATTTAAAACACGGATCAAAATGTTTTATCGCC
CCGCACACCTGAAGGGACGGGTAAGCGATGCGTGGAAATCACTGGAATTTAAACGTAGTGATCATTCACTCAATATATAT
AACCCAACTGAATATTACGTCGTATTTGCCGGACTAGCAGTCGATAAAGCCGATCTCACAAGCAAAATTGAATATATCGC
GCCCGGAGAACATAAACAGTTACCACTTCCAGCATCTGGCGGAAAGAACGTGAAATGGGCTGCGATCAATGATTATGGCG
GCAGTTCCGGGACAGAAACTCGTCCACTGCAATAA

Upstream 100 bases:

>100_bases
TACGTTACGGCGTTATCTGACCTTTCAGATAACGCCCTTTTCCTTCCTATTTCTCGTTGTATCAGGTTGAAAAATAACTA
TGTCAAAACGAACATTCGCG

Downstream 100 bases:

>100_bases
CAAATATAAAAACACAGGTCATCAGGGAATGCCACAACGACACCACCAGGGACATAAACGCACACCGAAACAGTTGGCGC
TCATTATCAAACGCTGTTTG

Product: gram-negative pili assembly chaperone protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 224; Mature: 224

Protein sequence:

>224_residues
MIFTLLCSFCIGQALAGGIVLQRTRVIYDASRKEAALPVANKGAETPYLLQSWVDNIDGTSRAPFIITPPLIRLEAGDDS
SLRIIKTADNLPENKESLFYINVRAIPAKKKSDDVNANELTLVFKTRIKMFYRPAHLKGRVSDAWKSLEFKRSDHSLNIY
NPTEYYVVFAGLAVDKADLTSKIEYIAPGEHKQLPLPASGGKNVKWAAINDYGGSSGTETRPLQ

Sequences:

>Translated_224_residues
MIFTLLCSFCIGQALAGGIVLQRTRVIYDASRKEAALPVANKGAETPYLLQSWVDNIDGTSRAPFIITPPLIRLEAGDDS
SLRIIKTADNLPENKESLFYINVRAIPAKKKSDDVNANELTLVFKTRIKMFYRPAHLKGRVSDAWKSLEFKRSDHSLNIY
NPTEYYVVFAGLAVDKADLTSKIEYIAPGEHKQLPLPASGGKNVKWAAINDYGGSSGTETRPLQ
>Mature_224_residues
MIFTLLCSFCIGQALAGGIVLQRTRVIYDASRKEAALPVANKGAETPYLLQSWVDNIDGTSRAPFIITPPLIRLEAGDDS
SLRIIKTADNLPENKESLFYINVRAIPAKKKSDDVNANELTLVFKTRIKMFYRPAHLKGRVSDAWKSLEFKRSDHSLNIY
NPTEYYVVFAGLAVDKADLTSKIEYIAPGEHKQLPLPASGGKNVKWAAINDYGGSSGTETRPLQ

Specific function: Could be required for the biogenesis of the putative yraH fimbria [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Periplasm [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 Ig-like (immunoglobulin-like) domain [H]

Homologues:

Organism=Escherichia coli, GI1789532, Length=224, Percent_Identity=97.3214285714286, Blast_Score=451, Evalue=1e-128,
Organism=Escherichia coli, GI1790771, Length=214, Percent_Identity=38.785046728972, Blast_Score=152, Evalue=2e-38,
Organism=Escherichia coli, GI1786743, Length=213, Percent_Identity=36.6197183098592, Blast_Score=140, Evalue=9e-35,
Organism=Escherichia coli, GI1786333, Length=233, Percent_Identity=35.6223175965665, Blast_Score=119, Evalue=2e-28,
Organism=Escherichia coli, GI1787171, Length=202, Percent_Identity=34.6534653465347, Blast_Score=118, Evalue=3e-28,
Organism=Escherichia coli, GI1788428, Length=213, Percent_Identity=30.5164319248826, Blast_Score=106, Evalue=1e-24,
Organism=Escherichia coli, GI1786936, Length=199, Percent_Identity=31.6582914572864, Blast_Score=99, Evalue=2e-22,
Organism=Escherichia coli, GI87082203, Length=223, Percent_Identity=29.1479820627803, Blast_Score=97, Evalue=1e-21,
Organism=Escherichia coli, GI1788677, Length=159, Percent_Identity=32.7044025157233, Blast_Score=96, Evalue=1e-21,
Organism=Escherichia coli, GI87081806, Length=232, Percent_Identity=29.7413793103448, Blast_Score=88, Evalue=6e-19,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR008962
- InterPro:   IPR001829
- InterPro:   IPR016148
- InterPro:   IPR018046
- InterPro:   IPR016147 [H]

Pfam domain/function: PF02753 Pili_assembly_C; PF00345 Pili_assembly_N [H]

EC number: NA

Molecular weight: Translated: 24803; Mature: 24803

Theoretical pI: Translated: 9.44; Mature: 9.44

Prosite motif: PS00635 PILI_CHAPERONE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
0.9 %Met     (Translated Protein)
1.8 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIFTLLCSFCIGQALAGGIVLQRTRVIYDASRKEAALPVANKGAETPYLLQSWVDNIDGT
CHHHHHHHHHHHHHHHCCEEEEEEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHCCCCC
SRAPFIITPPLIRLEAGDDSSLRIIKTADNLPENKESLFYINVRAIPAKKKSDDVNANEL
CCCCEEECCCEEEEECCCCCCEEEEEECCCCCCCCCCEEEEEEEEECCCCCCCCCCCCEE
TLVFKTRIKMFYRPAHLKGRVSDAWKSLEFKRSDHSLNIYNPTEYYVVFAGLAVDKADLT
EEEEEEEEHHEECCCCCCCCHHHHHHCCEEECCCCEEEEECCCEEEEEEEECEECCHHHH
SKIEYIAPGEHKQLPLPASGGKNVKWAAINDYGGSSGTETRPLQ
HCEEEECCCCCCCCCCCCCCCCEEEEEEEECCCCCCCCCCCCCC
>Mature Secondary Structure
MIFTLLCSFCIGQALAGGIVLQRTRVIYDASRKEAALPVANKGAETPYLLQSWVDNIDGT
CHHHHHHHHHHHHHHHCCEEEEEEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHCCCCC
SRAPFIITPPLIRLEAGDDSSLRIIKTADNLPENKESLFYINVRAIPAKKKSDDVNANEL
CCCCEEECCCEEEEECCCCCCEEEEEECCCCCCCCCCEEEEEEEEECCCCCCCCCCCCEE
TLVFKTRIKMFYRPAHLKGRVSDAWKSLEFKRSDHSLNIYNPTEYYVVFAGLAVDKADLT
EEEEEEEEHHEECCCCCCCCHHHHHHCCEEECCCCEEEEECCCEEEEEEEECEECCHHHH
SKIEYIAPGEHKQLPLPASGGKNVKWAAINDYGGSSGTETRPLQ
HCEEEECCCCCCCCCCCCCCCCEEEEEEEECCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]