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The map label for this gene is yodB [H]

Identifier: 209400552

GI number: 209400552

Start: 2574517

End: 2575047

Strand: Direct

Name: yodB [H]

Synonym: ECH74115_2753

Alternate gene names: 209400552

Gene position: 2574517-2575047 (Clockwise)

Preceding gene: 209399884

Following gene: 209396229

Centisome position: 46.2

GC content: 42.18

Gene sequence:

>531_bases
ATGAACCGATTCTCAAAAACTCAAATTTATTTACATTGGATAACGCTGCTTTTCGTTGCAATAACCTATGCCGCGATGGA
ACTCCGTGGCTGGTTTCCTAAAGGTAGTAGTACTTATCTGCTGATGCGAGAAACACATTACAATGCGGGTATATTCGTTT
GGGTGTTAATGTTTTCACGCCTGATTATAAAACACCGTTATAGTGATCCTTCTATTGTGCCACCGCCACCTGCCTGGCAA
ATGAAAGCGGCTTCGCTAATGCACATCATGCTTTATATAACCTTCCTTGCGCTTCCTCTGCTGGGGATTGCTTTGATGGC
TTACAGTGGAAAATCGTGGAGTTTCCTTGGTTTCAATGTGTCTCCCTTTGTTACCCCAAACAGCGAAATTAAAGCACTGA
TAAAAAATATTCACGAAACCTGGGCAAATATAGGCTACTTTTTAATCGTAGCTCACGCTGGCGCAGCACTCTTTCATCAC
TACATTCAGAAAGATAATACTCTGTTACGAATGATGCCTCGCCGCAAATAA

Upstream 100 bases:

>100_bases
ATCAATTTTTTAAATAACAAATTCTTAAAACCACATCTGTATAAGGAATTTTTAAGGTTCGTGGGATAGCTTGACTGTGA
AAATTACAGGAGCTACAAAA

Downstream 100 bases:

>100_bases
GTCGATCCTCTGACAAAGGAAATGTGAACCATGGACATCAACGCATCATAAATGTTTACGCAAGTGCATACCGCACTCTT
TCCACTATCAACAAGGAGGA

Product: nickel-dependent hydrogenase, b-type cytochrome subunit

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 176; Mature: 176

Protein sequence:

>176_residues
MNRFSKTQIYLHWITLLFVAITYAAMELRGWFPKGSSTYLLMRETHYNAGIFVWVLMFSRLIIKHRYSDPSIVPPPPAWQ
MKAASLMHIMLYITFLALPLLGIALMAYSGKSWSFLGFNVSPFVTPNSEIKALIKNIHETWANIGYFLIVAHAGAALFHH
YIQKDNTLLRMMPRRK

Sequences:

>Translated_176_residues
MNRFSKTQIYLHWITLLFVAITYAAMELRGWFPKGSSTYLLMRETHYNAGIFVWVLMFSRLIIKHRYSDPSIVPPPPAWQ
MKAASLMHIMLYITFLALPLLGIALMAYSGKSWSFLGFNVSPFVTPNSEIKALIKNIHETWANIGYFLIVAHAGAALFHH
YIQKDNTLLRMMPRRK
>Mature_176_residues
MNRFSKTQIYLHWITLLFVAITYAAMELRGWFPKGSSTYLLMRETHYNAGIFVWVLMFSRLIIKHRYSDPSIVPPPPAWQ
MKAASLMHIMLYITFLALPLLGIALMAYSGKSWSFLGFNVSPFVTPNSEIKALIKNIHETWANIGYFLIVAHAGAALFHH
YIQKDNTLLRMMPRRK

Specific function: Unknown

COG id: COG3038

COG function: function code C; Cytochrome B561

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the cytochrome b561 family [H]

Homologues:

Organism=Escherichia coli, GI87082013, Length=176, Percent_Identity=99.4318181818182, Blast_Score=358, Evalue=1e-101,
Organism=Escherichia coli, GI87081903, Length=175, Percent_Identity=42.2857142857143, Blast_Score=101, Evalue=3e-23,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005797
- InterPro:   IPR016174 [H]

Pfam domain/function: PF00033 Cytochrom_B_N [H]

EC number: NA

Molecular weight: Translated: 20366; Mature: 20366

Theoretical pI: Translated: 10.55; Mature: 10.55

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
5.7 %Met     (Translated Protein)
5.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
5.7 %Met     (Mature Protein)
5.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNRFSKTQIYLHWITLLFVAITYAAMELRGWFPKGSSTYLLMRETHYNAGIFVWVLMFSR
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCCCCHHHHHHHHHHH
LIIKHRYSDPSIVPPPPAWQMKAASLMHIMLYITFLALPLLGIALMAYSGKSWSFLGFNV
HHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCC
SPFVTPNSEIKALIKNIHETWANIGYFLIVAHAGAALFHHYIQKDNTLLRMMPRRK
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCCC
>Mature Secondary Structure
MNRFSKTQIYLHWITLLFVAITYAAMELRGWFPKGSSTYLLMRETHYNAGIFVWVLMFSR
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCCCCHHHHHHHHHHH
LIIKHRYSDPSIVPPPPAWQMKAASLMHIMLYITFLALPLLGIALMAYSGKSWSFLGFNV
HHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCC
SPFVTPNSEIKALIKNIHETWANIGYFLIVAHAGAALFHHYIQKDNTLLRMMPRRK
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9097040; 9278503 [H]