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The map label for this gene is ymfK [C]

Identifier: 209400501

GI number: 209400501

Start: 2707764

End: 2708459

Strand: Direct

Name: ymfK [C]

Synonym: ECH74115_2924

Alternate gene names: 209400501

Gene position: 2707764-2708459 (Clockwise)

Preceding gene: 209396306

Following gene: 209396847

Centisome position: 48.6

GC content: 45.4

Gene sequence:

>696_bases
ATGGATGGTTCCAGTACAGAGCGTAATAATAAGGACATGAAAATGAAATGGTATGAACTGGCTAGATCCAGAATGAAAGA
GCTCGGCATAACTCAAGAGAAGTTAGCCGAAGAGCTAGGTATGACGCAGGGTGGAATTGGACACTGGTTGCGCGGATCTC
GTCATCCATCTCTTAGTGATATTGGTGTGGTGTTTAAATACCTTGGTATTGATAACATATCATTCAACCACGACGGGACA
TTTTCACCTGTTGGCGAATACTCATCGGCCCCAGTTAAAAAACAATATGAGTACCCTGTTTTTTCTCATGTTCAGGCTGG
GATGTTCTCTCCAGAACTCAGAACCTTTACCAAAGGTGATGCGGAGAGATTGGTAAGCACAACCAAAAAAGCCAGTGACT
CTGCATTCTGGCTTGAGGTTGAAGGTAACTCAATGACCGCACCAACAGGTTCCAAACCTAGTTTTCCTGACGGGATGTTA
ATTCTGGTTGACCCTGAGCAAGCTGTTGAGCCCGGCGATTTCTGCATAGCCAGACTTGGTGGTGATGAATTTACCTTCAA
GAAACTGATCAGGGATAGCGGTCAGGTGTTTCTACAACCACTAAACCCGCAATATCCAATGATCCCATGCAATGAGAGTT
GTTCCGTTGTGGGGAAAGTTATCGCCAGCCAATGGCCTGAAGAGACGTTTGGGTAA

Upstream 100 bases:

>100_bases
CTCGATATTTTCGTAGGTTGCTCATATGCCCTCCATAGTAACCACGAATAAAAAAATACAATATGTACTTCTCAAATACA
AGTAAAAATACACATTGTGC

Downstream 100 bases:

>100_bases
AGAGGATAGATGGAGTTTAATGGCCATGAGTATCAAGCGGTCAAAAAGAAGTTCATCTATTCATTGAAAGCATAAGGCCA
TCTGAGTATATCCGTAATGA

Product: repressor protein

Products: NA

Alternate protein names: ORF-96 protein [H]

Number of amino acids: Translated: 231; Mature: 231

Protein sequence:

>231_residues
MDGSSTERNNKDMKMKWYELARSRMKELGITQEKLAEELGMTQGGIGHWLRGSRHPSLSDIGVVFKYLGIDNISFNHDGT
FSPVGEYSSAPVKKQYEYPVFSHVQAGMFSPELRTFTKGDAERLVSTTKKASDSAFWLEVEGNSMTAPTGSKPSFPDGML
ILVDPEQAVEPGDFCIARLGGDEFTFKKLIRDSGQVFLQPLNPQYPMIPCNESCSVVGKVIASQWPEETFG

Sequences:

>Translated_231_residues
MDGSSTERNNKDMKMKWYELARSRMKELGITQEKLAEELGMTQGGIGHWLRGSRHPSLSDIGVVFKYLGIDNISFNHDGT
FSPVGEYSSAPVKKQYEYPVFSHVQAGMFSPELRTFTKGDAERLVSTTKKASDSAFWLEVEGNSMTAPTGSKPSFPDGML
ILVDPEQAVEPGDFCIARLGGDEFTFKKLIRDSGQVFLQPLNPQYPMIPCNESCSVVGKVIASQWPEETFG
>Mature_231_residues
MDGSSTERNNKDMKMKWYELARSRMKELGITQEKLAEELGMTQGGIGHWLRGSRHPSLSDIGVVFKYLGIDNISFNHDGT
FSPVGEYSSAPVKKQYEYPVFSHVQAGMFSPELRTFTKGDAERLVSTTKKASDSAFWLEVEGNSMTAPTGSKPSFPDGML
ILVDPEQAVEPGDFCIARLGGDEFTFKKLIRDSGQVFLQPLNPQYPMIPCNESCSVVGKVIASQWPEETFG

Specific function: May control the expression of the integrase and inhibit excision of the mobile element R391, and regulate the expression of other genes as well [H]

COG id: COG1974

COG function: function code KT; SOS-response transcriptional repressors (RecA-mediated autopeptidases)

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH cro/C1-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001387
- InterPro:   IPR010982
- InterPro:   IPR019759
- InterPro:   IPR015927
- InterPro:   IPR011056 [H]

Pfam domain/function: PF01381 HTH_3; PF00717 Peptidase_S24 [H]

EC number: NA

Molecular weight: Translated: 25632; Mature: 25632

Theoretical pI: Translated: 5.14; Mature: 5.14

Prosite motif: PS50943 HTH_CROC1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
3.9 %Met     (Translated Protein)
5.2 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
3.9 %Met     (Mature Protein)
5.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDGSSTERNNKDMKMKWYELARSRMKELGITQEKLAEELGMTQGGIGHWLRGSRHPSLSD
CCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCHHHHHCCCCCCCHHH
IGVVFKYLGIDNISFNHDGTFSPVGEYSSAPVKKQYEYPVFSHVQAGMFSPELRTFTKGD
HHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCHHHHHCCCH
AERLVSTTKKASDSAFWLEVEGNSMTAPTGSKPSFPDGMLILVDPEQAVEPGDFCIARLG
HHHHHHHHHCCCCCEEEEEECCCEEECCCCCCCCCCCCEEEEECCHHHCCCCCEEEEEEC
GDEFTFKKLIRDSGQVFLQPLNPQYPMIPCNESCSVVGKVIASQWPEETFG
CCHHHHHHHHHCCCCEEEEECCCCCCEEECCCCHHHHHHHHHHCCCCCCCC
>Mature Secondary Structure
MDGSSTERNNKDMKMKWYELARSRMKELGITQEKLAEELGMTQGGIGHWLRGSRHPSLSD
CCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCHHHHHCCCCCCCHHH
IGVVFKYLGIDNISFNHDGTFSPVGEYSSAPVKKQYEYPVFSHVQAGMFSPELRTFTKGD
HHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCHHHHHCCCH
AERLVSTTKKASDSAFWLEVEGNSMTAPTGSKPSFPDGMLILVDPEQAVEPGDFCIARLG
HHHHHHHHHCCCCCEEEEEECCCEEECCCCCCCCCCCCEEEEECCHHHCCCCCEEEEEEC
GDEFTFKKLIRDSGQVFLQPLNPQYPMIPCNESCSVVGKVIASQWPEETFG
CCHHHHHHHHHCCCCEEEEECCCCCCEEECCCCHHHHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11157923; 12193633 [H]