Click here to switch to the map view.

The map label for this gene is ydbD [H]

Identifier: 209400439

GI number: 209400439

Start: 1905567

End: 1907873

Strand: Direct

Name: ydbD [H]

Synonym: ECH74115_2010

Alternate gene names: 209400439

Gene position: 1905567-1907873 (Clockwise)

Preceding gene: 209399276

Following gene: 209395890

Centisome position: 34.2

GC content: 42.96

Gene sequence:

>2307_bases
ATGTTTAAGCCCAGGCTTTGCAGCTGGATAGGTTTACTTCCCCTGTTTATGCTGAGTCTTCCAGTACAGGCGGAACTTCG
ATGCGTTGCAAATGCAGTTGATATTGAAACTTTTTTTTCTGCGGCTACCGCTGAAGATAAACAACAAGTTGAACAAGCTA
TCAACAGTAGCGTGAATCTTGTCCCCTTCGGTTTATCTGCATCGGACTGGAAAGTGCATCGTGGCGATTTAGTGGTAGAA
GGTAATATAGAGAGTAATCAAAAATTGATTGTTCTTGGCAATTTGACAGTCAAAGGTAATATTTCCACTTTCTCTCTTTC
TAATCCATGGGTTATTCTCGGTAACGTGACGGCAACGAATATAGTTACGGATTCACCACTGTTAATTACCGGTTCGATAA
ATGCAAGTGGACTGGTATTTATCGACTCATATTACGATAATCCGTCTACGATTAAGGGGAGTATTAATGCGCGTGGGATA
TTTATCAATGACATAATTGCACCTGTTGTTGCGTCTTCGACAAATAGTGAATTCATGGTCCGTGCGAGTGACAAAAATGA
CACTGAAAATGTCAAAAAAGCGCTGATGATAATAAATCCTGATGCATATTATTGGGGTCTAATAAATGATGAAGATGCTC
TGAAAGAAATTTTTAAGCGAAGCAATATTCGCATGGCAGGGAATGTCTGTAATCAGATGAAAAAAGAAGCGCTGTTTCGC
CTTAAGCCTTCTCCTGAGTTAGTGCAGGAATTGCAAATGCTGGATGAAGGCAACGTTGCTGCATTTGAAGGACGAGATAT
TGCGACATTTGATCTTGCCATAATGCGAACTCTCCCAAGGCTTAAAGGAATTTCAGCTAACCTACGCAAACAACTTATTA
ATAGCAATGATGGACAAACGATTGAAAGTATGGCGAGATATATGCCTGACAATGAGATTCTGGAGTTGACCGATCAGCAA
TTGGGTTACCAGCCTGTTGTTCTGGGGTTGCTCGACCGTGAACCGCTCTCTGTCGAAATAATGACGCGAATGAGTCATCT
ACCTGATGGTGTCGGTCCGTTGAATCTTGCGCTACGTGAAAATCTCCCTCTGGATATCGTCATGACTCTGGCGAAAAGAG
ATTGGGATATGATCATTCAGGAGCTTTATAAAGATGCGTGGTTATTGCCCGAATCCATTATTGATGGCTATATCCGCAGT
GATGATTCCTCTATTCGTCAGGTCGGTGCTGGAGGACAACTCACCTACAATCAGGCAATGCAGTTGGCGAACGATTCATC
AAACGATGTTGTCACAAGCTTAGCGTTAAAGCTGGCAGAGATGAAACACCATGGTCAATTGTTGCGGATGACGCCACAAG
AGAGTGACAAAATAGCAGTATATTTATACCAAAAATTCGAGAATGACGATGATCTAATAGGTGCGTTATTTTTAGCGTTG
CCAGATAACTTACAGTTTAATTTTGTTAAAAGGATGGAGAAAAAATCCCCTGCCTACTTTTGCTGTCGGGATATGCAGAT
AATTCACTCTGACGCTGCTTTACAACGGTTATTGACACGTTTCAACGATCCTGAGGGGTGGAGTAATCTGGCGAAAAATC
AGTATCTGAGCACGTCGATGAAACAAAAAATTTGGCAACGTGCTTTATCGCATCGGAAAAATAATCCCAAAGCAGATTCA
GATGCATATGAAACCAGCGCTGATATGATTTTGTCTGAGCTTATCAGCTACGGTGAAGTTGATGACCAGATGCTATTAAA
TGCCACCTCTCTGATACGTTCGGACGACTGGGACTTTTTAGAGAGTGCATTAATTAGTTGGGATAATTTACCCGCTGTTG
TTCTCAAGGAATTACAGCAAAACACGCCACGCAATGATATTTGGGCGAAGTTTTTTCTGAGGCAGGAAAACAGTTCCCGT
GCGCAGGTTAACGAAGCGTTACGTGTTTATTATGCACTAGACCCCGATGCGTTAGCACAACTGGATGTACTGGCAAAACA
ACCGGATCGTATATGGTGGAGTACACTGGCGAAAAGCAATCTCACATTTTTCAAGTTCGGCGCACTTAACAACCGCCACA
CACCGCCTGCAGTACTGGCGGCAGAAATTGATCCCGAGTGGTGGATTGTGGCGATGAATAATCCCCGTTTTCCAGTTGAT
GTATTAAAGGCGAGGCTGAAACGTGATCCTTTGCTGGCGTTAAAGCTTGTTAACCCTGAACTGGATTTAGTTCGCCAGCT
GGCGCTTAACGGTAAGACGCGCGCAATACGGGAACAAGCGATGAGAAAACTTGATGAGTTGTATTGA

Upstream 100 bases:

>100_bases
AGTGTTGTCTACGTTGGATGGTATTTCGCGAGAATAACGAATATACAAAAGGGAAAGATGCATTTCCCTTTTGTTTCTTT
TTTAATGGCATGGAGTGCAT

Downstream 100 bases:

>100_bases
ATAACAGCGTAATAATTTTTAACCACTTGATTTATTGGGGATAATCATTCCTGACAGTGAGTCCCCAATACCTTGATATA
TTCTGAATTTTTAATGAAGC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 768; Mature: 768

Protein sequence:

>768_residues
MFKPRLCSWIGLLPLFMLSLPVQAELRCVANAVDIETFFSAATAEDKQQVEQAINSSVNLVPFGLSASDWKVHRGDLVVE
GNIESNQKLIVLGNLTVKGNISTFSLSNPWVILGNVTATNIVTDSPLLITGSINASGLVFIDSYYDNPSTIKGSINARGI
FINDIIAPVVASSTNSEFMVRASDKNDTENVKKALMIINPDAYYWGLINDEDALKEIFKRSNIRMAGNVCNQMKKEALFR
LKPSPELVQELQMLDEGNVAAFEGRDIATFDLAIMRTLPRLKGISANLRKQLINSNDGQTIESMARYMPDNEILELTDQQ
LGYQPVVLGLLDREPLSVEIMTRMSHLPDGVGPLNLALRENLPLDIVMTLAKRDWDMIIQELYKDAWLLPESIIDGYIRS
DDSSIRQVGAGGQLTYNQAMQLANDSSNDVVTSLALKLAEMKHHGQLLRMTPQESDKIAVYLYQKFENDDDLIGALFLAL
PDNLQFNFVKRMEKKSPAYFCCRDMQIIHSDAALQRLLTRFNDPEGWSNLAKNQYLSTSMKQKIWQRALSHRKNNPKADS
DAYETSADMILSELISYGEVDDQMLLNATSLIRSDDWDFLESALISWDNLPAVVLKELQQNTPRNDIWAKFFLRQENSSR
AQVNEALRVYYALDPDALAQLDVLAKQPDRIWWSTLAKSNLTFFKFGALNNRHTPPAVLAAEIDPEWWIVAMNNPRFPVD
VLKARLKRDPLLALKLVNPELDLVRQLALNGKTRAIREQAMRKLDELY

Sequences:

>Translated_768_residues
MFKPRLCSWIGLLPLFMLSLPVQAELRCVANAVDIETFFSAATAEDKQQVEQAINSSVNLVPFGLSASDWKVHRGDLVVE
GNIESNQKLIVLGNLTVKGNISTFSLSNPWVILGNVTATNIVTDSPLLITGSINASGLVFIDSYYDNPSTIKGSINARGI
FINDIIAPVVASSTNSEFMVRASDKNDTENVKKALMIINPDAYYWGLINDEDALKEIFKRSNIRMAGNVCNQMKKEALFR
LKPSPELVQELQMLDEGNVAAFEGRDIATFDLAIMRTLPRLKGISANLRKQLINSNDGQTIESMARYMPDNEILELTDQQ
LGYQPVVLGLLDREPLSVEIMTRMSHLPDGVGPLNLALRENLPLDIVMTLAKRDWDMIIQELYKDAWLLPESIIDGYIRS
DDSSIRQVGAGGQLTYNQAMQLANDSSNDVVTSLALKLAEMKHHGQLLRMTPQESDKIAVYLYQKFENDDDLIGALFLAL
PDNLQFNFVKRMEKKSPAYFCCRDMQIIHSDAALQRLLTRFNDPEGWSNLAKNQYLSTSMKQKIWQRALSHRKNNPKADS
DAYETSADMILSELISYGEVDDQMLLNATSLIRSDDWDFLESALISWDNLPAVVLKELQQNTPRNDIWAKFFLRQENSSR
AQVNEALRVYYALDPDALAQLDVLAKQPDRIWWSTLAKSNLTFFKFGALNNRHTPPAVLAAEIDPEWWIVAMNNPRFPVD
VLKARLKRDPLLALKLVNPELDLVRQLALNGKTRAIREQAMRKLDELY
>Mature_768_residues
MFKPRLCSWIGLLPLFMLSLPVQAELRCVANAVDIETFFSAATAEDKQQVEQAINSSVNLVPFGLSASDWKVHRGDLVVE
GNIESNQKLIVLGNLTVKGNISTFSLSNPWVILGNVTATNIVTDSPLLITGSINASGLVFIDSYYDNPSTIKGSINARGI
FINDIIAPVVASSTNSEFMVRASDKNDTENVKKALMIINPDAYYWGLINDEDALKEIFKRSNIRMAGNVCNQMKKEALFR
LKPSPELVQELQMLDEGNVAAFEGRDIATFDLAIMRTLPRLKGISANLRKQLINSNDGQTIESMARYMPDNEILELTDQQ
LGYQPVVLGLLDREPLSVEIMTRMSHLPDGVGPLNLALRENLPLDIVMTLAKRDWDMIIQELYKDAWLLPESIIDGYIRS
DDSSIRQVGAGGQLTYNQAMQLANDSSNDVVTSLALKLAEMKHHGQLLRMTPQESDKIAVYLYQKFENDDDLIGALFLAL
PDNLQFNFVKRMEKKSPAYFCCRDMQIIHSDAALQRLLTRFNDPEGWSNLAKNQYLSTSMKQKIWQRALSHRKNNPKADS
DAYETSADMILSELISYGEVDDQMLLNATSLIRSDDWDFLESALISWDNLPAVVLKELQQNTPRNDIWAKFFLRQENSSR
AQVNEALRVYYALDPDALAQLDVLAKQPDRIWWSTLAKSNLTFFKFGALNNRHTPPAVLAAEIDPEWWIVAMNNPRFPVD
VLKARLKRDPLLALKLVNPELDLVRQLALNGKTRAIREQAMRKLDELY

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: To E.coli ykiA [H]

Homologues:

Organism=Escherichia coli, GI87081900, Length=768, Percent_Identity=96.7447916666667, Blast_Score=1520, Evalue=0.0,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 86604; Mature: 86604

Theoretical pI: Translated: 4.92; Mature: 4.92

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFKPRLCSWIGLLPLFMLSLPVQAELRCVANAVDIETFFSAATAEDKQQVEQAINSSVNL
CCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCEE
VPFGLSASDWKVHRGDLVVEGNIESNQKLIVLGNLTVKGNISTFSLSNPWVILGNVTATN
EEECCCCCCCEEECCCEEEECCCCCCCEEEEEEEEEEECCCEEEECCCCEEEEECCEEEE
IVTDSPLLITGSINASGLVFIDSYYDNPSTIKGSINARGIFINDIIAPVVASSTNSEFMV
EECCCCEEEEECCCCCEEEEEEECCCCCCCEEECCCCCEEEHHHHHHHHHHCCCCCEEEE
RASDKNDTENVKKALMIINPDAYYWGLINDEDALKEIFKRSNIRMAGNVCNQMKKEALFR
EECCCCCHHHHHEEEEEECCCCEEEEEECCHHHHHHHHHHCCCEEHHHHHHHHHHHHHEE
LKPSPELVQELQMLDEGNVAAFEGRDIATFDLAIMRTLPRLKGISANLRKQLINSNDGQT
CCCCHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCHH
IESMARYMPDNEILELTDQQLGYQPVVLGLLDREPLSVEIMTRMSHLPDGVGPLNLALRE
HHHHHHHCCCCHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHHHCCCCCCCCCHHHHC
NLPLDIVMTLAKRDWDMIIQELYKDAWLLPESIIDGYIRSDDSSIRQVGAGGQLTYNQAM
CCCHHHHHHHHHCCHHHHHHHHHHHHCCCCHHHHCCHHCCCCHHHHHHCCCCCEEHHHHH
QLANDSSNDVVTSLALKLAEMKHHGQLLRMTPQESDKIAVYLYQKFENDDDLIGALFLAL
HHCCCCCCHHHHHHHHHHHHHHHCCCEEEECCCCCCCEEEEEEEECCCCCHHHHHHHHHC
PDNLQFNFVKRMEKKSPAYFCCRDMQIIHSDAALQRLLTRFNDPEGWSNLAKNQYLSTSM
CCCCCHHHHHHHHHCCCCEEEECCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHH
KQKIWQRALSHRKNNPKADSDAYETSADMILSELISYGEVDDQMLLNATSLIRSDDWDFL
HHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCHHHH
ESALISWDNLPAVVLKELQQNTPRNDIWAKFFLRQENSSRAQVNEALRVYYALDPDALAQ
HHHHHCCCCCHHHHHHHHHHCCCCHHHHHHHHEECCCCCHHHHHHHEEEEEEECHHHHHH
LDVLAKQPDRIWWSTLAKSNLTFFKFGALNNRHTPPAVLAAEIDPEWWIVAMNNPRFPVD
HHHHHCCCCHHHHHHHHHCCCCEEEEECCCCCCCCCEEEEEEECCCEEEEEECCCCCCHH
VLKARLKRDPLLALKLVNPELDLVRQLALNGKTRAIREQAMRKLDELY
HHHHHHCCCCEEEEEECCCHHHHHHHHHHCCCHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MFKPRLCSWIGLLPLFMLSLPVQAELRCVANAVDIETFFSAATAEDKQQVEQAINSSVNL
CCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCEE
VPFGLSASDWKVHRGDLVVEGNIESNQKLIVLGNLTVKGNISTFSLSNPWVILGNVTATN
EEECCCCCCCEEECCCEEEECCCCCCCEEEEEEEEEEECCCEEEECCCCEEEEECCEEEE
IVTDSPLLITGSINASGLVFIDSYYDNPSTIKGSINARGIFINDIIAPVVASSTNSEFMV
EECCCCEEEEECCCCCEEEEEEECCCCCCCEEECCCCCEEEHHHHHHHHHHCCCCCEEEE
RASDKNDTENVKKALMIINPDAYYWGLINDEDALKEIFKRSNIRMAGNVCNQMKKEALFR
EECCCCCHHHHHEEEEEECCCCEEEEEECCHHHHHHHHHHCCCEEHHHHHHHHHHHHHEE
LKPSPELVQELQMLDEGNVAAFEGRDIATFDLAIMRTLPRLKGISANLRKQLINSNDGQT
CCCCHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCHH
IESMARYMPDNEILELTDQQLGYQPVVLGLLDREPLSVEIMTRMSHLPDGVGPLNLALRE
HHHHHHHCCCCHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHHHCCCCCCCCCHHHHC
NLPLDIVMTLAKRDWDMIIQELYKDAWLLPESIIDGYIRSDDSSIRQVGAGGQLTYNQAM
CCCHHHHHHHHHCCHHHHHHHHHHHHCCCCHHHHCCHHCCCCHHHHHHCCCCCEEHHHHH
QLANDSSNDVVTSLALKLAEMKHHGQLLRMTPQESDKIAVYLYQKFENDDDLIGALFLAL
HHCCCCCCHHHHHHHHHHHHHHHCCCEEEECCCCCCCEEEEEEEECCCCCHHHHHHHHHC
PDNLQFNFVKRMEKKSPAYFCCRDMQIIHSDAALQRLLTRFNDPEGWSNLAKNQYLSTSM
CCCCCHHHHHHHHHCCCCEEEECCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHH
KQKIWQRALSHRKNNPKADSDAYETSADMILSELISYGEVDDQMLLNATSLIRSDDWDFL
HHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCHHHH
ESALISWDNLPAVVLKELQQNTPRNDIWAKFFLRQENSSRAQVNEALRVYYALDPDALAQ
HHHHHCCCCCHHHHHHHHHHCCCCHHHHHHHHEECCCCCHHHHHHHEEEEEEECHHHHHH
LDVLAKQPDRIWWSTLAKSNLTFFKFGALNNRHTPPAVLAAEIDPEWWIVAMNNPRFPVD
HHHHHCCCCHHHHHHHHHCCCCEEEEECCCCCCCCCEEEEEEECCCEEEEEECCCCCCHH
VLKARLKRDPLLALKLVNPELDLVRQLALNGKTRAIREQAMRKLDELY
HHHHHHCCCCEEEEEECCCHHHHHHHHHHCCCHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503; 1665988 [H]