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The map label for this gene is rzpD [H]

Identifier: 209400367

GI number: 209400367

Start: 1564026

End: 1564487

Strand: Direct

Name: rzpD [H]

Synonym: ECH74115_1614

Alternate gene names: 209400367

Gene position: 1564026-1564487 (Clockwise)

Preceding gene: 209397363

Following gene: 209395761

Centisome position: 28.07

GC content: 50.87

Gene sequence:

>462_bases
ATGAGCAGAATAACCGCGATTATCTCCGCTCTGCTCATCTGCATCATCGTCTGCCTGTCATGGGCTGTTAATCATTACCG
TGATAACGCCATTACCTACAAAGCCCAGCGCGACAAAAATGCCAGAGAACTGAAGCTGGCGAACGTGGCAATTACTGACA
TGCAGATGCGTCAGCGTGATGTTGCTGCGCTCGATGCAAAATACACGAAGGAGTTAGCTGATGCGAAAGCTGAAAATGAT
GCTCTGCATGATGATGTTGCCGCTGGTCGTCGTCGGTTGCACATCAAAGCAGTCTGTCAGTCAGTGCGTGAAGCCACCAC
CGCCTCCGGCGTGGATAATGCAGCCTCCCCCCGACTGGCAGACACCGCTGAACGGGATTATTTCACCCTCAGAGAGAGGC
TGATCACTATGCAAAAACAACTGGAAGGAACCCAGAAGTATATTAATGAGCAGTGCAGATAG

Upstream 100 bases:

>100_bases
CTTCACTGCCGGGCGCTGGTTATGGTCAGTTCGAGCATAAGGCTGACAGCCTGATTGCAAAATTCAAAGAAGCTGGCGGA
ACGGTCAGAGAGAGTGAGGT

Downstream 100 bases:

>100_bases
AGCTGCCCATATCGATGGGCAGCTCATGCAATTATTGTGAGCAATACACACGCGCTTCCAGCGGAGTATAAATGCCTAAA
GTAATAAAACCGAGCAATCC

Product: bacteriophage lysis protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 153; Mature: 152

Protein sequence:

>153_residues
MSRITAIISALLICIIVCLSWAVNHYRDNAITYKAQRDKNARELKLANVAITDMQMRQRDVAALDAKYTKELADAKAEND
ALHDDVAAGRRRLHIKAVCQSVREATTASGVDNAASPRLADTAERDYFTLRERLITMQKQLEGTQKYINEQCR

Sequences:

>Translated_153_residues
MSRITAIISALLICIIVCLSWAVNHYRDNAITYKAQRDKNARELKLANVAITDMQMRQRDVAALDAKYTKELADAKAEND
ALHDDVAAGRRRLHIKAVCQSVREATTASGVDNAASPRLADTAERDYFTLRERLITMQKQLEGTQKYINEQCR
>Mature_152_residues
SRITAIISALLICIIVCLSWAVNHYRDNAITYKAQRDKNARELKLANVAITDMQMRQRDVAALDAKYTKELADAKAENDA
LHDDVAAGRRRLHIKAVCQSVREATTASGVDNAASPRLADTAERDYFTLRERLITMQKQLEGTQKYINEQCR

Specific function: Necessary for host cell lysis. It is believed to code for an endopeptidase that cleaves the amino-carboxyl cross-link between the diaminopimelic acid and D-alanine residues in the murein component of the bacterial cell wall [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1786769, Length=153, Percent_Identity=95.4248366013072, Blast_Score=276, Evalue=5e-76,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004929 [H]

Pfam domain/function: PF03245 Phage_lysis [H]

EC number: 3.4.-.- [C]

Molecular weight: Translated: 17267; Mature: 17136

Theoretical pI: Translated: 8.92; Mature: 8.92

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.6 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
5.2 %Cys+Met (Translated Protein)
2.6 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
4.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSRITAIISALLICIIVCLSWAVNHYRDNAITYKAQRDKNARELKLANVAITDMQMRQRD
CHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEHHCCCCHHHHHHHHHHHHHHHHHHHH
VAALDAKYTKELADAKAENDALHDDVAAGRRRLHIKAVCQSVREATTASGVDNAASPRLA
HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCH
DTAERDYFTLRERLITMQKQLEGTQKYINEQCR
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
SRITAIISALLICIIVCLSWAVNHYRDNAITYKAQRDKNARELKLANVAITDMQMRQRD
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEHHCCCCHHHHHHHHHHHHHHHHHHHH
VAALDAKYTKELADAKAENDALHDDVAAGRRRLHIKAVCQSVREATTASGVDNAASPRLA
HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCH
DTAERDYFTLRERLITMQKQLEGTQKYINEQCR
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]