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The map label for this gene is yraJ [H]

Identifier: 209400215

GI number: 209400215

Start: 4133362

End: 4135953

Strand: Direct

Name: yraJ [H]

Synonym: ECH74115_4462

Alternate gene names: 209400215

Gene position: 4133362-4135953 (Clockwise)

Preceding gene: 209400854

Following gene: 209397195

Centisome position: 74.18

GC content: 47.3

Gene sequence:

>2592_bases
ATGATTATGGCGGCAGTTCCGGGACAGAAACTCGTCCACTGCAATAACAAATATAAAAACACAGGTCATCAGGGAATGCC
ACAACGACACCACCAGGGACATAAACGCACACCGAAACAGTTGGCGCTCATTATCAAACGCTGTTTGCCGATGGTGCTCA
CTGGCAGCGGCATGCTTTGCACTACCGCTAACGCCGAAGAGTATTATTTCGACCCCATTATGCTGGAAACCACAAAAAGT
GGTATGCAAACAACCGATCTGTCACGTTTTTCAAAAAAATACGCACAACTACCAGGAACTTATCAGGTTGATATCTGGCT
GAATAAAAAGAAGGTTTCACAGAAAAAAATTACATTTACCGCCAATGCAGAGCAACTTCTGCAGCCACAGTTTACGGTAG
AACAACTACGTGAGCTGGGTATTAAGGTGGATGAAATCCCGGCGCTGGCTGAAAAAGATGACGATAGCGTGATCAACTCG
CTTGAACAAATCATTCCCGGTACAGCTGCTGAATTTGATTTCAATCATCAGCGACTTAATTTGAGCATTCCCCAAATTGC
ACTGTACCGTGATGCAAGAGGTTACGTCTCCCCTTCTCGTTGGGACGATGGTATACCAACGCTGTTTACCAACTACTCGT
TTACAGGTTCTGATAACCGTTACCGCCAGGGCAATCGTAGCCAACGACAGTACCTAAATATGCAAAATGGTGCCAATTTT
GGCCCCTGGCGATTACGTAACTATTCTACGTGGACACGCAACGATCAGGCGTCAAGCTGGAACACTATCAGTAGTTATTT
ACAACGTGATATCAAGGCGTTGAAGTCTCAGTTGCTTCTGGGAGAAAGCGCCACCAGCGGCAGTATTTTTTCCAGCTACA
ACTTTACTGGCGTGCAACTCGCTTCCGACGATAATATGTTGCCAAACAGCCAGCGCGGATTTGCCCCAACGGTACGCGGT
ATCGCAAACAGTAGTGCAATCGTGACTATCAGGCAAAATGGTTATGTGATCTATCAAAGCAACGTGCCAGCGGGTGCCTT
TGAAATTAACGATCTCTACCCCTCTTCCAACAGCGGCGATTTAGAAGTCACGATTGAAGAAAGTGACGGTACGCAACGTC
GCTTTATCCAGCCTTATTCTTCATTACCCATGATGCAGCGACCTGGGCATCTAAAATATAGCGCGACCGCTGGACGCTAT
CGCGCTGATGCAAACAGTGATAGCAAGGAACCCGAATTTGCTGAAGCCACGGCAATATATGGTTTGAATAATACTTTTAC
GCTGTATGGCGGCCTGCTCGGTTCTGAAGATTATTATGCGCTGGGGATCGGTATCGGCGGCACACTTGGCGCACTGGGCG
CGTTGTCGATGGATATCAACAGAGCTGACACCCAATTCGATAACCAGCACTCTTTTCATGGCTATCAATGGCGTACGCAG
TACATCAAAGATATCCCGGAAACCAACACCAATATCGCTGTCAGCTACTATCGCTATACCAACGATGGCTATTTTAGTTT
TGATGAAGCCAATACCCGCAATTGGGACTATAACAGTCGCCAAAAAAGTGAAATTCAATTCAACATCAGCCAGACAATAT
TTGATGGGGTAAGTCTGTATGCCTCCGGTTCACAGCAAGACTATTGGGGCAATAACGAGAAAAACAGGAATATCTCTGTT
GGGGTTTCCGGCCAGCAATGGGGAATTGGTTACAGCCTGAATTATCAATACAGCCGCTACACTGATCAAAATAATGACCG
CGCACTCTCTTTGAATCTCAGTATTCCGTTAGAACGCTGGTTACCGCGTAGCCGGGTTTCCTATCAGATGACCAGCCAGA
AAGATCGCCCAACCCAACATGAAATGCGTCTTGATGGCTCACTGCTGGATGATGGTCGCCTGAGCTATAGTCTGGAACAA
AGTCTGGATGACGATAACAACCATAACAGTAGCGTGAACGCCAGTTACCGTTCACCTTATGGAACCTTCAGTGCCGGATA
CAGTTACGGTAATGACAGTAGCCAATACAATTACGGCGTTACCGGCGGCGTGGTTATCCATCCTCATGGTGTGACACTCT
CGCAATATCTGGGCAACGCTTTTGCGCTTATTGATGCTAACGGGGCATCTGGCGTGAGGATACAAAACTATCCGGGGATT
GCTACTGATCCCTTTGGCTATGCAGTGGTTCCTTATCTCACAACTTATCAGGAAAACCGTCTCTCGGTAGATACTACGCA
GCTGCCCGATAACGTCGATCTTGAACAAACAACACAGTTTGTGGTGCCCAACAGAGGTGCAATGGTAGCGGCGCGTTTCA
ACGCCAATATCGGTTATCGCGTACTTGTTACAGTCAGCGATCGCAACGGTAAACCGTTGCCCTTTGGCGCTCTTGCCAGC
AACGATGATACGGGGCAACAAAGTATCGTCGATGAGGGCGGCATACTATATCTCTCTGGGATATCGAGTAAATCACAAAG
CTGGACTGTACGCTGGGGAAATCAGGCAGATCAACAATGTCAGTTTGCTTTTAGTACACCGGATTCAGAACCAACAACCT
CTGTATTACAAGGCACAGCGCAGTGCCATTAA

Upstream 100 bases:

>100_bases
GCCGATCTCACAAGCAAAATTGAATATATCGCGCCCGGAGAACATAAACAGTTACCACTTCCAGCATCTGGCGGAAAGAA
CGTGAAATGGGCTGCGATCA

Downstream 100 bases:

>100_bases
GGATAAAAAAATGAAAAGAGCGCCTCTTATAACAGGACTTTTGTTGATATCCACATCCTGCGCTTATGCCTCCTCAGAAG
GGTGTGGAGCTGACAGCACT

Product: fimbrial usher family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 863; Mature: 863

Protein sequence:

>863_residues
MIMAAVPGQKLVHCNNKYKNTGHQGMPQRHHQGHKRTPKQLALIIKRCLPMVLTGSGMLCTTANAEEYYFDPIMLETTKS
GMQTTDLSRFSKKYAQLPGTYQVDIWLNKKKVSQKKITFTANAEQLLQPQFTVEQLRELGIKVDEIPALAEKDDDSVINS
LEQIIPGTAAEFDFNHQRLNLSIPQIALYRDARGYVSPSRWDDGIPTLFTNYSFTGSDNRYRQGNRSQRQYLNMQNGANF
GPWRLRNYSTWTRNDQASSWNTISSYLQRDIKALKSQLLLGESATSGSIFSSYNFTGVQLASDDNMLPNSQRGFAPTVRG
IANSSAIVTIRQNGYVIYQSNVPAGAFEINDLYPSSNSGDLEVTIEESDGTQRRFIQPYSSLPMMQRPGHLKYSATAGRY
RADANSDSKEPEFAEATAIYGLNNTFTLYGGLLGSEDYYALGIGIGGTLGALGALSMDINRADTQFDNQHSFHGYQWRTQ
YIKDIPETNTNIAVSYYRYTNDGYFSFDEANTRNWDYNSRQKSEIQFNISQTIFDGVSLYASGSQQDYWGNNEKNRNISV
GVSGQQWGIGYSLNYQYSRYTDQNNDRALSLNLSIPLERWLPRSRVSYQMTSQKDRPTQHEMRLDGSLLDDGRLSYSLEQ
SLDDDNNHNSSVNASYRSPYGTFSAGYSYGNDSSQYNYGVTGGVVIHPHGVTLSQYLGNAFALIDANGASGVRIQNYPGI
ATDPFGYAVVPYLTTYQENRLSVDTTQLPDNVDLEQTTQFVVPNRGAMVAARFNANIGYRVLVTVSDRNGKPLPFGALAS
NDDTGQQSIVDEGGILYLSGISSKSQSWTVRWGNQADQQCQFAFSTPDSEPTTSVLQGTAQCH

Sequences:

>Translated_863_residues
MIMAAVPGQKLVHCNNKYKNTGHQGMPQRHHQGHKRTPKQLALIIKRCLPMVLTGSGMLCTTANAEEYYFDPIMLETTKS
GMQTTDLSRFSKKYAQLPGTYQVDIWLNKKKVSQKKITFTANAEQLLQPQFTVEQLRELGIKVDEIPALAEKDDDSVINS
LEQIIPGTAAEFDFNHQRLNLSIPQIALYRDARGYVSPSRWDDGIPTLFTNYSFTGSDNRYRQGNRSQRQYLNMQNGANF
GPWRLRNYSTWTRNDQASSWNTISSYLQRDIKALKSQLLLGESATSGSIFSSYNFTGVQLASDDNMLPNSQRGFAPTVRG
IANSSAIVTIRQNGYVIYQSNVPAGAFEINDLYPSSNSGDLEVTIEESDGTQRRFIQPYSSLPMMQRPGHLKYSATAGRY
RADANSDSKEPEFAEATAIYGLNNTFTLYGGLLGSEDYYALGIGIGGTLGALGALSMDINRADTQFDNQHSFHGYQWRTQ
YIKDIPETNTNIAVSYYRYTNDGYFSFDEANTRNWDYNSRQKSEIQFNISQTIFDGVSLYASGSQQDYWGNNEKNRNISV
GVSGQQWGIGYSLNYQYSRYTDQNNDRALSLNLSIPLERWLPRSRVSYQMTSQKDRPTQHEMRLDGSLLDDGRLSYSLEQ
SLDDDNNHNSSVNASYRSPYGTFSAGYSYGNDSSQYNYGVTGGVVIHPHGVTLSQYLGNAFALIDANGASGVRIQNYPGI
ATDPFGYAVVPYLTTYQENRLSVDTTQLPDNVDLEQTTQFVVPNRGAMVAARFNANIGYRVLVTVSDRNGKPLPFGALAS
NDDTGQQSIVDEGGILYLSGISSKSQSWTVRWGNQADQQCQFAFSTPDSEPTTSVLQGTAQCH
>Mature_863_residues
MIMAAVPGQKLVHCNNKYKNTGHQGMPQRHHQGHKRTPKQLALIIKRCLPMVLTGSGMLCTTANAEEYYFDPIMLETTKS
GMQTTDLSRFSKKYAQLPGTYQVDIWLNKKKVSQKKITFTANAEQLLQPQFTVEQLRELGIKVDEIPALAEKDDDSVINS
LEQIIPGTAAEFDFNHQRLNLSIPQIALYRDARGYVSPSRWDDGIPTLFTNYSFTGSDNRYRQGNRSQRQYLNMQNGANF
GPWRLRNYSTWTRNDQASSWNTISSYLQRDIKALKSQLLLGESATSGSIFSSYNFTGVQLASDDNMLPNSQRGFAPTVRG
IANSSAIVTIRQNGYVIYQSNVPAGAFEINDLYPSSNSGDLEVTIEESDGTQRRFIQPYSSLPMMQRPGHLKYSATAGRY
RADANSDSKEPEFAEATAIYGLNNTFTLYGGLLGSEDYYALGIGIGGTLGALGALSMDINRADTQFDNQHSFHGYQWRTQ
YIKDIPETNTNIAVSYYRYTNDGYFSFDEANTRNWDYNSRQKSEIQFNISQTIFDGVSLYASGSQQDYWGNNEKNRNISV
GVSGQQWGIGYSLNYQYSRYTDQNNDRALSLNLSIPLERWLPRSRVSYQMTSQKDRPTQHEMRLDGSLLDDGRLSYSLEQ
SLDDDNNHNSSVNASYRSPYGTFSAGYSYGNDSSQYNYGVTGGVVIHPHGVTLSQYLGNAFALIDANGASGVRIQNYPGI
ATDPFGYAVVPYLTTYQENRLSVDTTQLPDNVDLEQTTQFVVPNRGAMVAARFNANIGYRVLVTVSDRNGKPLPFGALAS
NDDTGQQSIVDEGGILYLSGISSKSQSWTVRWGNQADQQCQFAFSTPDSEPTTSVLQGTAQCH

Specific function: Could be involved in the export and assembly of the putative yraH fimbrial subunit across the outer membrane [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell outer membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the fimbrial export usher family [H]

Homologues:

Organism=Escherichia coli, GI1789533, Length=838, Percent_Identity=99.0453460620525, Blast_Score=1717, Evalue=0.0,
Organism=Escherichia coli, GI1787172, Length=870, Percent_Identity=38.735632183908, Blast_Score=566, Evalue=1e-162,
Organism=Escherichia coli, GI1790772, Length=882, Percent_Identity=37.7551020408163, Blast_Score=564, Evalue=1e-161,
Organism=Escherichia coli, GI1786744, Length=858, Percent_Identity=37.6456876456876, Blast_Score=555, Evalue=1e-159,
Organism=Escherichia coli, GI1786332, Length=856, Percent_Identity=32.0093457943925, Blast_Score=386, Evalue=1e-108,
Organism=Escherichia coli, GI1788427, Length=790, Percent_Identity=27.4683544303797, Blast_Score=301, Evalue=2e-82,
Organism=Escherichia coli, GI87081778, Length=821, Percent_Identity=29.4762484774665, Blast_Score=278, Evalue=1e-75,
Organism=Escherichia coli, GI1789610, Length=803, Percent_Identity=26.5255292652553, Blast_Score=183, Evalue=3e-47,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000015
- InterPro:   IPR018030 [H]

Pfam domain/function: PF00577 Usher [H]

EC number: NA

Molecular weight: Translated: 96375; Mature: 96375

Theoretical pI: Translated: 6.29; Mature: 6.29

Prosite motif: PS01151 FIMBRIAL_USHER

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIMAAVPGQKLVHCNNKYKNTGHQGMPQRHHQGHKRTPKQLALIIKRCLPMVLTGSGMLC
CEEEECCCCEEEECCCCCCCCCCCCCCHHHHCCCCCCHHHHHHHHHHHHHHEECCCCEEE
TTANAEEYYFDPIMLETTKSGMQTTDLSRFSKKYAQLPGTYQVDIWLNKKKVSQKKITFT
EECCCCCEEECCEEEEECCCCCCHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCEEEEEE
ANAEQLLQPQFTVEQLRELGIKVDEIPALAEKDDDSVINSLEQIIPGTAAEFDFNHQRLN
ECHHHHHCCCHHHHHHHHHCCEEECCCCCCCCCCHHHHHHHHHHCCCCCEECCCCCEEEE
LSIPQIALYRDARGYVSPSRWDDGIPTLFTNYSFTGSDNRYRQGNRSQRQYLNMQNGANF
ECCCEEEEEECCCCCCCCCCCCCCCCEEEECEEECCCCCCCCCCCCHHHHHCCCCCCCCC
GPWRLRNYSTWTRNDQASSWNTISSYLQRDIKALKSQLLLGESATSGSIFSSYNFTGVQL
CCEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHEECCCCCCCCEEECCCCCEEEE
ASDDNMLPNSQRGFAPTVRGIANSSAIVTIRQNGYVIYQSNVPAGAFEINDLYPSSNSGD
CCCCCCCCCCCCCCCHHHHHCCCCCEEEEEECCCEEEEECCCCCCEEEEEECCCCCCCCC
LEVTIEESDGTQRRFIQPYSSLPMMQRPGHLKYSATAGRYRADANSDSKEPEFAEATAIY
EEEEEECCCCCHHHHHCCHHCCCCCCCCCCEEEECCCCCEECCCCCCCCCCCCHHEEEEE
GLNNTFTLYGGLLGSEDYYALGIGIGGTLGALGALSMDINRADTQFDNQHSFHGYQWRTQ
ECCCEEEEEECEECCCCEEEEEECCCCHHHHHHHEEECCCCCCCCCCCCCCCCCCHHHHH
YIKDIPETNTNIAVSYYRYTNDGYFSFDEANTRNWDYNSRQKSEIQFNISQTIFDGVSLY
HHHHCCCCCCCEEEEEEEECCCCEEEECCCCCCCCCCCCCCCCEEEEEEHHHHHCCEEEE
ASGSQQDYWGNNEKNRNISVGVSGQQWGIGYSLNYQYSRYTDQNNDRALSLNLSIPLERW
ECCCCCCCCCCCCCCCEEEEEECCCCCCCEEEEECEEHCCCCCCCCEEEEEEEECCHHHC
LPRSRVSYQMTSQKDRPTQHEMRLDGSLLDDGRLSYSLEQSLDDDNNHNSSVNASYRSPY
CCCCCCEEEECCCCCCCCHHHEEECCCCCCCCCCEEEHHHCCCCCCCCCCCCCCCCCCCC
GTFSAGYSYGNDSSQYNYGVTGGVVIHPHGVTLSQYLGNAFALIDANGASGVRIQNYPGI
CCCCCCCCCCCCCCCEECCCCCCEEEECCCCCHHHHHCCEEEEEECCCCCCCEEECCCCC
ATDPFGYAVVPYLTTYQENRLSVDTTQLPDNVDLEQTTQFVVPNRGAMVAARFNANIGYR
CCCCCCEEEEEEEEECCCCCEEEECCCCCCCCCHHHCCEEEECCCCEEEEEEECCCCCEE
VLVTVSDRNGKPLPFGALASNDDTGQQSIVDEGGILYLSGISSKSQSWTVRWGNQADQQC
EEEEEECCCCCCCCCCCCCCCCCCCCHHHHCCCCEEEEECCCCCCCEEEEEECCCCCCEE
QFAFSTPDSEPTTSVLQGTAQCH
EEEECCCCCCCCHHHHHCCCCCC
>Mature Secondary Structure
MIMAAVPGQKLVHCNNKYKNTGHQGMPQRHHQGHKRTPKQLALIIKRCLPMVLTGSGMLC
CEEEECCCCEEEECCCCCCCCCCCCCCHHHHCCCCCCHHHHHHHHHHHHHHEECCCCEEE
TTANAEEYYFDPIMLETTKSGMQTTDLSRFSKKYAQLPGTYQVDIWLNKKKVSQKKITFT
EECCCCCEEECCEEEEECCCCCCHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCEEEEEE
ANAEQLLQPQFTVEQLRELGIKVDEIPALAEKDDDSVINSLEQIIPGTAAEFDFNHQRLN
ECHHHHHCCCHHHHHHHHHCCEEECCCCCCCCCCHHHHHHHHHHCCCCCEECCCCCEEEE
LSIPQIALYRDARGYVSPSRWDDGIPTLFTNYSFTGSDNRYRQGNRSQRQYLNMQNGANF
ECCCEEEEEECCCCCCCCCCCCCCCCEEEECEEECCCCCCCCCCCCHHHHHCCCCCCCCC
GPWRLRNYSTWTRNDQASSWNTISSYLQRDIKALKSQLLLGESATSGSIFSSYNFTGVQL
CCEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHEECCCCCCCCEEECCCCCEEEE
ASDDNMLPNSQRGFAPTVRGIANSSAIVTIRQNGYVIYQSNVPAGAFEINDLYPSSNSGD
CCCCCCCCCCCCCCCHHHHHCCCCCEEEEEECCCEEEEECCCCCCEEEEEECCCCCCCCC
LEVTIEESDGTQRRFIQPYSSLPMMQRPGHLKYSATAGRYRADANSDSKEPEFAEATAIY
EEEEEECCCCCHHHHHCCHHCCCCCCCCCCEEEECCCCCEECCCCCCCCCCCCHHEEEEE
GLNNTFTLYGGLLGSEDYYALGIGIGGTLGALGALSMDINRADTQFDNQHSFHGYQWRTQ
ECCCEEEEEECEECCCCEEEEEECCCCHHHHHHHEEECCCCCCCCCCCCCCCCCCHHHHH
YIKDIPETNTNIAVSYYRYTNDGYFSFDEANTRNWDYNSRQKSEIQFNISQTIFDGVSLY
HHHHCCCCCCCEEEEEEEECCCCEEEECCCCCCCCCCCCCCCCEEEEEEHHHHHCCEEEE
ASGSQQDYWGNNEKNRNISVGVSGQQWGIGYSLNYQYSRYTDQNNDRALSLNLSIPLERW
ECCCCCCCCCCCCCCCEEEEEECCCCCCCEEEEECEEHCCCCCCCCEEEEEEEECCHHHC
LPRSRVSYQMTSQKDRPTQHEMRLDGSLLDDGRLSYSLEQSLDDDNNHNSSVNASYRSPY
CCCCCCEEEECCCCCCCCHHHEEECCCCCCCCCCEEEHHHCCCCCCCCCCCCCCCCCCCC
GTFSAGYSYGNDSSQYNYGVTGGVVIHPHGVTLSQYLGNAFALIDANGASGVRIQNYPGI
CCCCCCCCCCCCCCCEECCCCCCEEEECCCCCHHHHHCCEEEEEECCCCCCCEEECCCCC
ATDPFGYAVVPYLTTYQENRLSVDTTQLPDNVDLEQTTQFVVPNRGAMVAARFNANIGYR
CCCCCCEEEEEEEEECCCCCEEEECCCCCCCCCHHHCCEEEECCCCEEEEEEECCCCCEE
VLVTVSDRNGKPLPFGALASNDDTGQQSIVDEGGILYLSGISSKSQSWTVRWGNQADQQC
EEEEEECCCCCCCCCCCCCCCCCCCCHHHHCCCCEEEEECCCCCCCEEEEEECCCCCCEE
QFAFSTPDSEPTTSVLQGTAQCH
EEEECCCCCCCCHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]