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The map label for this gene is yvbU [H]

Identifier: 209400196

GI number: 209400196

Start: 3118033

End: 3118911

Strand: Direct

Name: yvbU [H]

Synonym: ECH74115_3373

Alternate gene names: 209400196

Gene position: 3118033-3118911 (Clockwise)

Preceding gene: 209399483

Following gene: 209399829

Centisome position: 55.96

GC content: 42.89

Gene sequence:

>879_bases
ATGACTCTTACCCAAATAAATTCTTTACTCGCCGTGCTGGATTACGGTGGCTTTACTGAAGCCAGCAAGCGATTGTTCAT
GACGCAGTCGGCGGTAAGTCAGGCAATTGCTGCCCTCGAACAAGAACTTGGTGTGAATATACTGTTACGCGATCGCCGTA
AAGCTATACAACTGACCACAGCAGGTCACCGCATTGTGCAACATCTGCGCGCCATTAATCGGGAAGTTAACGCAGTAAAA
GAGATAGCCGAGCAGGAAAAGCAGAACCCTCAAAGAACGCTGAGACTTGGTTGTTTCCCCAGCGTCTGCGCCTGTATCTT
ACCGGTTGTGATTCGCTACTTTGAAATTCATCATCCGAATATAAAAATTATTCCTTTTGAGGAAAATAGCACAGCGATTA
TTGATTCGCTTCAGAATGAATCCATTGATGCCGGTTTTGTTCATTTTCCGGTGAGCGGAATGTACTCCGTGCCGATTTAT
CAGGATAAATTCACCGTAGTGTTACCGCCCAACCATGCTCTGGCAAAAAACAGCACTATTACAGTGGAAGAATTAATGGG
TGAACCATTAATCATTAGTAAAGGACGCTATGAATTAAGCATTATGGCACTATTTAAAGAAAAGAATATTACCCCACAGA
TAAAATATGAATTTAATCACCCGGATACAGCGATCAGTTTTATTCGACAGGGATTAGGCATCGCCTTATTACCAGAGTTA
ACGCTGAAAACCATTGCAGATGAATTGTGTTCCGTTCCTCTCGAACCAACCTTCTATCGACAGATTTCGTTGCTGGCTAA
AGAAAAGCCGGTAGAAGGCAGTCCACTGTTTTTACTACAAATGTGTACGGAACAACTAGTGGTGAGTGGAAAAATTTGA

Upstream 100 bases:

>100_bases
GTTGCGTCAAATTGTGATGTACTTTGCAGAACAGAAGTATAAATGGCGGCATGCTATTAGAGAAATTAATCGTTTTAATA
TTATTGATTAGCAAACTCTA

Downstream 100 bases:

>100_bases
TGTAAGACATGAGATTGATGACAAATGCAAGACTGCCTGATTCGCCACACTTAGTTGTACTATAGCCTTTACCAGGCGTA
ATAATTCGTTTTCACCTGAT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 292; Mature: 291

Protein sequence:

>292_residues
MTLTQINSLLAVLDYGGFTEASKRLFMTQSAVSQAIAALEQELGVNILLRDRRKAIQLTTAGHRIVQHLRAINREVNAVK
EIAEQEKQNPQRTLRLGCFPSVCACILPVVIRYFEIHHPNIKIIPFEENSTAIIDSLQNESIDAGFVHFPVSGMYSVPIY
QDKFTVVLPPNHALAKNSTITVEELMGEPLIISKGRYELSIMALFKEKNITPQIKYEFNHPDTAISFIRQGLGIALLPEL
TLKTIADELCSVPLEPTFYRQISLLAKEKPVEGSPLFLLQMCTEQLVVSGKI

Sequences:

>Translated_292_residues
MTLTQINSLLAVLDYGGFTEASKRLFMTQSAVSQAIAALEQELGVNILLRDRRKAIQLTTAGHRIVQHLRAINREVNAVK
EIAEQEKQNPQRTLRLGCFPSVCACILPVVIRYFEIHHPNIKIIPFEENSTAIIDSLQNESIDAGFVHFPVSGMYSVPIY
QDKFTVVLPPNHALAKNSTITVEELMGEPLIISKGRYELSIMALFKEKNITPQIKYEFNHPDTAISFIRQGLGIALLPEL
TLKTIADELCSVPLEPTFYRQISLLAKEKPVEGSPLFLLQMCTEQLVVSGKI
>Mature_291_residues
TLTQINSLLAVLDYGGFTEASKRLFMTQSAVSQAIAALEQELGVNILLRDRRKAIQLTTAGHRIVQHLRAINREVNAVKE
IAEQEKQNPQRTLRLGCFPSVCACILPVVIRYFEIHHPNIKIIPFEENSTAIIDSLQNESIDAGFVHFPVSGMYSVPIYQ
DKFTVVLPPNHALAKNSTITVEELMGEPLIISKGRYELSIMALFKEKNITPQIKYEFNHPDTAISFIRQGLGIALLPELT
LKTIADELCSVPLEPTFYRQISLLAKEKPVEGSPLFLLQMCTEQLVVSGKI

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1787530, Length=268, Percent_Identity=25.3731343283582, Blast_Score=97, Evalue=1e-21,
Organism=Escherichia coli, GI1787879, Length=262, Percent_Identity=29.0076335877863, Blast_Score=92, Evalue=6e-20,
Organism=Escherichia coli, GI1788887, Length=244, Percent_Identity=28.2786885245902, Blast_Score=85, Evalue=5e-18,
Organism=Escherichia coli, GI157672245, Length=273, Percent_Identity=26.007326007326, Blast_Score=85, Evalue=6e-18,
Organism=Escherichia coli, GI145693105, Length=276, Percent_Identity=26.4492753623188, Blast_Score=84, Evalue=1e-17,
Organism=Escherichia coli, GI1790399, Length=283, Percent_Identity=24.7349823321555, Blast_Score=82, Evalue=6e-17,
Organism=Escherichia coli, GI1787806, Length=281, Percent_Identity=21.3523131672598, Blast_Score=80, Evalue=2e-16,
Organism=Escherichia coli, GI1788748, Length=246, Percent_Identity=25.609756097561, Blast_Score=79, Evalue=4e-16,
Organism=Escherichia coli, GI2367136, Length=242, Percent_Identity=25.6198347107438, Blast_Score=79, Evalue=5e-16,
Organism=Escherichia coli, GI1787601, Length=244, Percent_Identity=24.5901639344262, Blast_Score=76, Evalue=3e-15,
Organism=Escherichia coli, GI1789204, Length=246, Percent_Identity=24.390243902439, Blast_Score=72, Evalue=5e-14,
Organism=Escherichia coli, GI1788296, Length=231, Percent_Identity=25.974025974026, Blast_Score=72, Evalue=5e-14,
Organism=Escherichia coli, GI1788481, Length=258, Percent_Identity=27.1317829457364, Blast_Score=70, Evalue=2e-13,
Organism=Escherichia coli, GI1788297, Length=258, Percent_Identity=25.5813953488372, Blast_Score=69, Evalue=5e-13,
Organism=Escherichia coli, GI1790262, Length=249, Percent_Identity=25.3012048192771, Blast_Score=65, Evalue=6e-12,
Organism=Escherichia coli, GI87082132, Length=148, Percent_Identity=28.3783783783784, Blast_Score=62, Evalue=4e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 32669; Mature: 32537

Theoretical pI: Translated: 6.87; Mature: 6.87

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTLTQINSLLAVLDYGGFTEASKRLFMTQSAVSQAIAALEQELGVNILLRDRRKAIQLTT
CCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEECCCCEEEEEH
AGHRIVQHLRAINREVNAVKEIAEQEKQNPQRTLRLGCFPSVCACILPVVIRYFEIHHPN
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHEEECCCHHHHHHHHHHHHHHHHCCCCC
IKIIPFEENSTAIIDSLQNESIDAGFVHFPVSGMYSVPIYQDKFTVVLPPNHALAKNSTI
EEEEEECCCCHHHHHHHCCCCCCCCEEEECCCCEEECCEECCCEEEEECCCCCCCCCCCE
TVEELMGEPLIISKGRYELSIMALFKEKNITPQIKYEFNHPDTAISFIRQGLGIALLPEL
EHHHHCCCCEEEECCCEEEEEEEEEHHCCCCCEEEEEECCCHHHHHHHHHCCCEEEHHHH
TLKTIADELCSVPLEPTFYRQISLLAKEKPVEGSPLFLLQMCTEQLVVSGKI
HHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCC
>Mature Secondary Structure 
TLTQINSLLAVLDYGGFTEASKRLFMTQSAVSQAIAALEQELGVNILLRDRRKAIQLTT
CHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEECCCCEEEEEH
AGHRIVQHLRAINREVNAVKEIAEQEKQNPQRTLRLGCFPSVCACILPVVIRYFEIHHPN
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHEEECCCHHHHHHHHHHHHHHHHCCCCC
IKIIPFEENSTAIIDSLQNESIDAGFVHFPVSGMYSVPIYQDKFTVVLPPNHALAKNSTI
EEEEEECCCCHHHHHHHCCCCCCCCEEEECCCCEEECCEECCCEEEEECCCCCCCCCCCE
TVEELMGEPLIISKGRYELSIMALFKEKNITPQIKYEFNHPDTAISFIRQGLGIALLPEL
EHHHHCCCCEEEECCCEEEEEEEEEHHCCCCCEEEEEECCCHHHHHHHHHCCCEEEHHHH
TLKTIADELCSVPLEPTFYRQISLLAKEKPVEGSPLFLLQMCTEQLVVSGKI
HHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]