Click here to switch to the map view.

The map label for this gene is yjbN [C]

Identifier: 209400087

GI number: 209400087

Start: 5179169

End: 5179291

Strand: Direct

Name: yjbN [C]

Synonym: ECH74115_5529

Alternate gene names: 209400087

Gene position: 5179169-5179291 (Clockwise)

Preceding gene: 209399512

Following gene: 209396375

Centisome position: 92.95

GC content: 43.9

Gene sequence:

>123_bases
ATGCACGGTAATTCTGAAATGCAAAAAATCAACCAAACCAGCGCAATGCCTGAAAAAACTGACGTTCACTGGAGTGGTCG
GTTTAGCGTTGCACCAATGCTCGATAGGATGTACCGTTTTTGA

Upstream 100 bases:

>100_bases
TGTTGTTATGGTATAGTACCCCGTTATTGAGCCTCCTGAACAGTGATGCTGAATAACATAACCACATGATATATCGATAA
AATAATCTCTACATTTGAAA

Downstream 100 bases:

>100_bases
AAAACAAATAGTTATATACTTTGTGGGAGCCTATTGGGAACCCGGCGTTTTCATTTCAAGGTGTAATCCATACGCGGCTT
AAGAATGAGATATAATGCGA

Product: TIM-barrel protein, YjbN family

Products: NA

Alternate protein names: TIM-Barrel Protein YjbN Family

Number of amino acids: Translated: 40; Mature: 40

Protein sequence:

>40_residues
MHGNSEMQKINQTSAMPEKTDVHWSGRFSVAPMLDRMYRF

Sequences:

>Translated_40_residues
MHGNSEMQKINQTSAMPEKTDVHWSGRFSVAPMLDRMYRF
>Mature_40_residues
MHGNSEMQKINQTSAMPEKTDVHWSGRFSVAPMLDRMYRF

Specific function: Unknown

COG id: COG0042

COG function: function code J; tRNA-dihydrouridine synthase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: 1.-.-.-

Molecular weight: Translated: 4715; Mature: 4715

Theoretical pI: Translated: 9.26; Mature: 9.26

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
12.5 %Met     (Translated Protein)
12.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
12.5 %Met     (Mature Protein)
12.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MHGNSEMQKINQTSAMPEKTDVHWSGRFSVAPMLDRMYRF
CCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHCC
>Mature Secondary Structure
MHGNSEMQKINQTSAMPEKTDVHWSGRFSVAPMLDRMYRF
CCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA