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The map label for this gene is yfcN

Identifier: 209399827

GI number: 209399827

Start: 3216421

End: 3216972

Strand: Direct

Name: yfcN

Synonym: ECH74115_3472

Alternate gene names: 209399827

Gene position: 3216421-3216972 (Clockwise)

Preceding gene: 209398413

Following gene: 209397743

Centisome position: 57.72

GC content: 52.36

Gene sequence:

>552_bases
ATGAAAAAGAAAACAACACTTAGCGAGGAGGACCAGGCTCTGTTTCGCCAGTTGATGGCGGGGACTCGCAAGATTAAGCA
GGACACCATTGTCCATCGGCCACAGCGTAAAAAAGTCAGCGAAGTGCCCGTCAAACGGTTGATTCAGGAGCAGGTTGACG
CCAGTCACTATTTCTCTGACGAATTTCAACCGTTATTAAATGCTGATGGCCCGGTGAAGTATGTACGCCCTGGTGTAGAC
CATTTTGAGGCGAAAAAGCTGCGCCGCGGCGATTATTCGCCGGAATTGTTTTTGGATTTACACGGTCTGACGCAGCTGCA
GGCCAAGCAGGAACTGGGCGCGTTGATCGCCGCCTGTCGCCGCGAACATGTGTTTTGCGCCTGCGTGATGCATGGTCACG
GGAAACATATATTGAAGCAACAAACACCGCTGTGGCTGGCACAACATCCGCATGTCATGGCGTTTCACCAGGCACCAAAA
GAGTATGGTGGTGATGCCGCATTGCTGGTGTTGATTGAAGTGGAAGAGTGGCTACCGCCGGAGTTGCCATGA

Upstream 100 bases:

>100_bases
CAGCATTCACGCGCGGTGAGTGAGGAAAAATACGTTTAAAACGATCGATTGCGCTACGAGTCGGGTAAACTGTAGGAAAA
TTAGAAATAGAGACAGATAA

Downstream 100 bases:

>100_bases
ATATTAGGGGGCGGATGCGTTTTGCCATTTCGCCCTGAATGCTGGTATCGAATGCCGGATGCGGCGTAAACGCCTGATCC
GGCTTATCAAAATGTGCAAA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 183; Mature: 183

Protein sequence:

>183_residues
MKKKTTLSEEDQALFRQLMAGTRKIKQDTIVHRPQRKKVSEVPVKRLIQEQVDASHYFSDEFQPLLNADGPVKYVRPGVD
HFEAKKLRRGDYSPELFLDLHGLTQLQAKQELGALIAACRREHVFCACVMHGHGKHILKQQTPLWLAQHPHVMAFHQAPK
EYGGDAALLVLIEVEEWLPPELP

Sequences:

>Translated_183_residues
MKKKTTLSEEDQALFRQLMAGTRKIKQDTIVHRPQRKKVSEVPVKRLIQEQVDASHYFSDEFQPLLNADGPVKYVRPGVD
HFEAKKLRRGDYSPELFLDLHGLTQLQAKQELGALIAACRREHVFCACVMHGHGKHILKQQTPLWLAQHPHVMAFHQAPK
EYGGDAALLVLIEVEEWLPPELP
>Mature_183_residues
MKKKTTLSEEDQALFRQLMAGTRKIKQDTIVHRPQRKKVSEVPVKRLIQEQVDASHYFSDEFQPLLNADGPVKYVRPGVD
HFEAKKLRRGDYSPELFLDLHGLTQLQAKQELGALIAACRREHVFCACVMHGHGKHILKQQTPLWLAQHPHVMAFHQAPK
EYGGDAALLVLIEVEEWLPPELP

Specific function: Unknown

COG id: COG2840

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 Smr domain

Homologues:

Organism=Escherichia coli, GI1788671, Length=183, Percent_Identity=96.7213114754098, Blast_Score=367, Evalue=1e-103,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): YFCN_ECO57 (Q8X5C4)

Other databases:

- EMBL:   AE005174
- EMBL:   BA000007
- PIR:   G91030
- PIR:   H85874
- RefSeq:   NP_288905.1
- RefSeq:   NP_311242.1
- ProteinModelPortal:   Q8X5C4
- SMR:   Q8X5C4
- EnsemblBacteria:   EBESCT00000029142
- EnsemblBacteria:   EBESCT00000055556
- GeneID:   915689
- GeneID:   957513
- GenomeReviews:   AE005174_GR
- GenomeReviews:   BA000007_GR
- KEGG:   ece:Z3594
- KEGG:   ecs:ECs3214
- GeneTree:   EBGT00050000011416
- HOGENOM:   HBG700609
- OMA:   CACIMHG
- ProtClustDB:   PRK04946
- BioCyc:   ECOL83334:ECS3214-MONOMER
- HAMAP:   MF_01042
- InterPro:   IPR002625
- InterPro:   IPR022990
- SMART:   SM00463

Pfam domain/function: PF01713 Smr

EC number: NA

Molecular weight: Translated: 20954; Mature: 20954

Theoretical pI: Translated: 8.50; Mature: 8.50

Prosite motif: PS50828 SMR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKKTTLSEEDQALFRQLMAGTRKIKQDTIVHRPQRKKVSEVPVKRLIQEQVDASHYFSD
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCH
EFQPLLNADGPVKYVRPGVDHFEAKKLRRGDYSPELFLDLHGLTQLQAKQELGALIAACR
HHHHHHCCCCCEEECCCCCCHHHHHHHHCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHH
REHVFCACVMHGHGKHILKQQTPLWLAQHPHVMAFHQAPKEYGGDAALLVLIEVEEWLPP
HCCEEEEEEECCCCHHHHHHCCCEEECCCCCEEEHHHCHHHHCCCEEEEEEEEHHHCCCC
ELP
CCC
>Mature Secondary Structure
MKKKTTLSEEDQALFRQLMAGTRKIKQDTIVHRPQRKKVSEVPVKRLIQEQVDASHYFSD
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCH
EFQPLLNADGPVKYVRPGVDHFEAKKLRRGDYSPELFLDLHGLTQLQAKQELGALIAACR
HHHHHHCCCCCEEECCCCCCHHHHHHHHCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHH
REHVFCACVMHGHGKHILKQQTPLWLAQHPHVMAFHQAPKEYGGDAALLVLIEVEEWLPP
HCCEEEEEEECCCCHHHHHHCCCEEECCCCCEEEHHHCHHHHCCCEEEEEEEEHHHCCCC
ELP
CCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796