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The map label for this gene is ydeO [C]

Identifier: 209399437

GI number: 209399437

Start: 312981

End: 313724

Strand: Direct

Name: ydeO [C]

Synonym: ECH74115_0304

Alternate gene names: 209399437

Gene position: 312981-313724 (Clockwise)

Preceding gene: 209397552

Following gene: 209397533

Centisome position: 5.62

GC content: 35.22

Gene sequence:

>744_bases
ATGGCAACTACATGTTCAGTTATATTGATTTTGGAGTCCTTTGATGTTTATTTCGGAAAAGAGAGTGTGTTTCTGGAGAG
AGGTTCATCTGTACTTGTCGACTCTAGCTCTAGAGATTTTTTCCTGACATATCCTGAAAGAGTGATAGTGGCGGATTTTG
GCGCTGAGTTTATTAGTCGCTATTTGAAAGCTAATAACTTAAGGGATATTTCTGATTGTAGGGAATATCCATCTTATTTA
AAAATAAACTTTGCTGACTTCAGTTTAATTAAAGGATTAATTAGTTGGGCTAATCACTGTGCTGAATACATAGAAATTTT
TGATGAGTCTATTGCTTTTACATGTCTCTCTGCATTTTCTTCTGAAAAACAATTTGGAGTATTTCTGTTTGGATGTTTGA
AAAGCACAGGGGCTAAAGTTAAAACGATTATTCATACGGATTTATCTGCACCATGGCGTCTTAAGGATATATCATCAAGA
TTATATCTCAGCGAAAGTTTACTAAAGAGGAAATTGAAAGAAGAGGGGGTATCATTCAGTAAGATCATACTTGATGAGAG
GATGCAAATGGCTGAATATTTACTCAGCACTCGTTGTTATCCTATTAGTAAAGTAGCTAAGGTCTGTGGTTATGCCAGTG
TCTCATACTTTACTTATGTATTTAGACGTTATTTTGGTGTTTCTCCAAGTCAATACTCTCAGAGGAGTTCAGAAAGTAAA
ATTCTTACTCACCAGGGAATCTGA

Upstream 100 bases:

>100_bases
ATCACACCCTATTTTTAGTGGTTTTTTATACTGAAGTTTGGCAAAGTGAACTTTATATACATATACTTCATCCTGGTTTC
AGTTAAATTGGGGGGATGAT

Downstream 100 bases:

>100_bases
TCATTGTTCTTGCCCCCTTATTTCCAGACAGGGGGGGTATCTTAAGTTAACGTTACCCGCTGACGTCGATATTCTCGCGG
AGAGCGATAACCCAACGCAC

Product: putative transcription regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 247; Mature: 246

Protein sequence:

>247_residues
MATTCSVILILESFDVYFGKESVFLERGSSVLVDSSSRDFFLTYPERVIVADFGAEFISRYLKANNLRDISDCREYPSYL
KINFADFSLIKGLISWANHCAEYIEIFDESIAFTCLSAFSSEKQFGVFLFGCLKSTGAKVKTIIHTDLSAPWRLKDISSR
LYLSESLLKRKLKEEGVSFSKIILDERMQMAEYLLSTRCYPISKVAKVCGYASVSYFTYVFRRYFGVSPSQYSQRSSESK
ILTHQGI

Sequences:

>Translated_247_residues
MATTCSVILILESFDVYFGKESVFLERGSSVLVDSSSRDFFLTYPERVIVADFGAEFISRYLKANNLRDISDCREYPSYL
KINFADFSLIKGLISWANHCAEYIEIFDESIAFTCLSAFSSEKQFGVFLFGCLKSTGAKVKTIIHTDLSAPWRLKDISSR
LYLSESLLKRKLKEEGVSFSKIILDERMQMAEYLLSTRCYPISKVAKVCGYASVSYFTYVFRRYFGVSPSQYSQRSSESK
ILTHQGI
>Mature_246_residues
ATTCSVILILESFDVYFGKESVFLERGSSVLVDSSSRDFFLTYPERVIVADFGAEFISRYLKANNLRDISDCREYPSYLK
INFADFSLIKGLISWANHCAEYIEIFDESIAFTCLSAFSSEKQFGVFLFGCLKSTGAKVKTIIHTDLSAPWRLKDISSRL
YLSESLLKRKLKEEGVSFSKIILDERMQMAEYLLSTRCYPISKVAKVCGYASVSYFTYVFRRYFGVSPSQYSQRSSESKI
LTHQGI

Specific function: Induces the expression of gadE and mdtEF. Could also regulate the expression of other genes involved in acid resistance [H]

COG id: COG2207

COG function: function code K; AraC-type DNA-binding domain-containing proteins

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1787776, Length=248, Percent_Identity=34.6774193548387, Blast_Score=147, Evalue=8e-37,
Organism=Escherichia coli, GI1789932, Length=245, Percent_Identity=33.469387755102, Blast_Score=142, Evalue=2e-35,
Organism=Escherichia coli, GI1786776, Length=236, Percent_Identity=28.3898305084746, Blast_Score=114, Evalue=8e-27,
Organism=Escherichia coli, GI1789933, Length=161, Percent_Identity=35.4037267080745, Blast_Score=107, Evalue=1e-24,
Organism=Escherichia coli, GI1790557, Length=247, Percent_Identity=29.5546558704453, Blast_Score=86, Evalue=3e-18,
Organism=Escherichia coli, GI1786778, Length=127, Percent_Identity=38.5826771653543, Blast_Score=77, Evalue=2e-15,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR018062
- InterPro:   IPR020449
- InterPro:   IPR018060 [H]

Pfam domain/function: PF00165 HTH_AraC [H]

EC number: NA

Molecular weight: Translated: 28185; Mature: 28053

Theoretical pI: Translated: 8.25; Mature: 8.25

Prosite motif: PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.8 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
2.8 %Cys     (Mature Protein)
0.8 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MATTCSVILILESFDVYFGKESVFLERGSSVLVDSSSRDFFLTYPERVIVADFGAEFISR
CCCHHEEEEEEEHHHHHCCCCHHEEECCCEEEEECCCCCEEEECCCEEEEEHHHHHHHHH
YLKANNLRDISDCREYPSYLKINFADFSLIKGLISWANHCAEYIEIFDESIAFTCLSAFS
HHHHCCCCCHHHHHCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
SEKQFGVFLFGCLKSTGAKVKTIIHTDLSAPWRLKDISSRLYLSESLLKRKLKEEGVSFS
CCCCHHHHHHHHHHCCCCCEEEEEEECCCCCEEHHHHHHHHHHHHHHHHHHHHHCCCCHH
KIILDERMQMAEYLLSTRCYPISKVAKVCGYASVSYFTYVFRRYFGVSPSQYSQRSSESK
HHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCHHHHHHHHHHHHHHCCCHHHHHHCCCCCC
ILTHQGI
CCCCCCC
>Mature Secondary Structure 
ATTCSVILILESFDVYFGKESVFLERGSSVLVDSSSRDFFLTYPERVIVADFGAEFISR
CCHHEEEEEEEHHHHHCCCCHHEEECCCEEEEECCCCCEEEECCCEEEEEHHHHHHHHH
YLKANNLRDISDCREYPSYLKINFADFSLIKGLISWANHCAEYIEIFDESIAFTCLSAFS
HHHHCCCCCHHHHHCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
SEKQFGVFLFGCLKSTGAKVKTIIHTDLSAPWRLKDISSRLYLSESLLKRKLKEEGVSFS
CCCCHHHHHHHHHHCCCCCEEEEEEECCCCCEEHHHHHHHHHHHHHHHHHHHHHCCCCHH
KIILDERMQMAEYLLSTRCYPISKVAKVCGYASVSYFTYVFRRYFGVSPSQYSQRSSESK
HHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCHHHHHHHHHHHHHHCCCHHHHHHCCCCCC
ILTHQGI
CCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]