Click here to switch to the map view.

The map label for this gene is rlpA

Identifier: 209399263

GI number: 209399263

Start: 748735

End: 749823

Strand: Reverse

Name: rlpA

Synonym: ECH74115_0721

Alternate gene names: 209399263

Gene position: 749823-748735 (Counterclockwise)

Preceding gene: 209396066

Following gene: 209398518

Centisome position: 13.46

GC content: 57.39

Gene sequence:

>1089_bases
ATGCGTAAGCAGTGGCTCGGGATCTGCATCGCGGCAGGAATGCTCGCGGCATGTACAAGCGATGATGGTCAGCAACAGAC
AGTAAGTGTACCGCAGCCTGCGGTATGTAACGGCCCCATAGTTGAAATTAGCGGGGCGGACCCGCGTTTCGAACCACTGA
ACGCGACGGCAAATCAGGATTACCAGCGCGACGGTAAAAGCTACAAAATCGTGCAGGATCCGTCTCGATTTATCCAGGCG
GGACTGGCGGCAATCTATGATGCCGAACCAGGCAGTAACCTGACGGCCTCTGGCGAAGCTTTCGATCCGACACAGCTGAC
GGCGGCCCATCCAACGCTTCCGATCCCCAGCTACGCCAGAATCACTAACCTGGCTAACGGGCGAATGATCGTGGTGCGCA
TTAATGATCGCGGTCCTTACGGCAACGACCGCGTTATTTCGCTTTCTCGCGCAGCAGCTGACCGTCTTAACACGTCAAAC
AACACCAAAGTTCGTATCGATCCGATTATTGTCGCCCAGGATGGTTCGCTTTCTGGTCCTGGTATGGCTTGTACCACAGT
CGCCAAACAGACTTACGCCCTGCCTGCACCTCCCGATTTAAGCGGTGGCGCGGGAACAAGTTCAGTGTCTGGCCCGCAGG
GTGACATTCTTCCGGTCAGTAATTCGACGCTAAAAAGCGAAGATCCGACCGGCGCGCCGGTAACCAGCAGCGGTTTCCTC
GGCGCACCAACGACCTTAGCGCCAGGTGTACTGGAAGGCAGCGAACCGACGCCTGCTCCACAGCCCGTTGTTACAGCTCC
GTCGACAACGCCTGCAACCTCGCCTGCAATGGTGACACCGCAAGCCGCCTCGCAAAGCGCCAGCGGCAACTTTATGGTGC
AGGTCGGGGCCGTAAGCGATCAGGCTCGTGCGCAACAGTACCAACAGCAACTGGGACAGAAGTTCGGCGTCCCCGGTCGC
GTAACTCAAAATGGCGCGGTCTGGCGGATCCAGCTTGGCCCATTCGCCAACAAAGCCGAAGCCAGTACCTTGCAGCAACG
TTTGCAAACCGAAGCCCAATTACAGTCATTTATTACCACCGCGCAGTAG

Upstream 100 bases:

>100_bases
GGAGGATCGGCGCTAATTGTGCTGATGGCTGGGTTCGGGATTGTAATGTCAATCCACACCCACAGGAAAATGTTGTCGAA
AAGCGTGTAAGAGGTGCGCA

Downstream 100 bases:

>100_bases
CGTAAAGCAGGCATCTGATGTGTCAATTTCTGTAAATGACGTTAACAAAGTCACGCGGAAAGTCAGATGCCTGCCGGTAG
TGCATTTGCTATAGTAGGGC

Product: rare lipoprotein A

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 362; Mature: 362

Protein sequence:

>362_residues
MRKQWLGICIAAGMLAACTSDDGQQQTVSVPQPAVCNGPIVEISGADPRFEPLNATANQDYQRDGKSYKIVQDPSRFIQA
GLAAIYDAEPGSNLTASGEAFDPTQLTAAHPTLPIPSYARITNLANGRMIVVRINDRGPYGNDRVISLSRAAADRLNTSN
NTKVRIDPIIVAQDGSLSGPGMACTTVAKQTYALPAPPDLSGGAGTSSVSGPQGDILPVSNSTLKSEDPTGAPVTSSGFL
GAPTTLAPGVLEGSEPTPAPQPVVTAPSTTPATSPAMVTPQAASQSASGNFMVQVGAVSDQARAQQYQQQLGQKFGVPGR
VTQNGAVWRIQLGPFANKAEASTLQQRLQTEAQLQSFITTAQ

Sequences:

>Translated_362_residues
MRKQWLGICIAAGMLAACTSDDGQQQTVSVPQPAVCNGPIVEISGADPRFEPLNATANQDYQRDGKSYKIVQDPSRFIQA
GLAAIYDAEPGSNLTASGEAFDPTQLTAAHPTLPIPSYARITNLANGRMIVVRINDRGPYGNDRVISLSRAAADRLNTSN
NTKVRIDPIIVAQDGSLSGPGMACTTVAKQTYALPAPPDLSGGAGTSSVSGPQGDILPVSNSTLKSEDPTGAPVTSSGFL
GAPTTLAPGVLEGSEPTPAPQPVVTAPSTTPATSPAMVTPQAASQSASGNFMVQVGAVSDQARAQQYQQQLGQKFGVPGR
VTQNGAVWRIQLGPFANKAEASTLQQRLQTEAQLQSFITTAQ
>Mature_362_residues
MRKQWLGICIAAGMLAACTSDDGQQQTVSVPQPAVCNGPIVEISGADPRFEPLNATANQDYQRDGKSYKIVQDPSRFIQA
GLAAIYDAEPGSNLTASGEAFDPTQLTAAHPTLPIPSYARITNLANGRMIVVRINDRGPYGNDRVISLSRAAADRLNTSN
NTKVRIDPIIVAQDGSLSGPGMACTTVAKQTYALPAPPDLSGGAGTSSVSGPQGDILPVSNSTLKSEDPTGAPVTSSGFL
GAPTTLAPGVLEGSEPTPAPQPVVTAPSTTPATSPAMVTPQAASQSASGNFMVQVGAVSDQARAQQYQQQLGQKFGVPGR
VTQNGAVWRIQLGPFANKAEASTLQQRLQTEAQLQSFITTAQ

Specific function: Unknown

COG id: COG0797

COG function: function code M; Lipoproteins

Gene ontology:

Cell location: Cell membrane; Lipid-anchor (Probable)

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rlpA family

Homologues:

Organism=Escherichia coli, GI1786852, Length=362, Percent_Identity=99.171270718232, Blast_Score=721, Evalue=0.0,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RLPA_ECO57 (Q8XBQ1)

Other databases:

- EMBL:   AE005174
- EMBL:   BA000007
- PIR:   C85563
- PIR:   G90712
- RefSeq:   NP_286359.1
- RefSeq:   NP_308698.1
- ProteinModelPortal:   Q8XBQ1
- SMR:   Q8XBQ1
- EnsemblBacteria:   EBESCT00000026835
- EnsemblBacteria:   EBESCT00000056397
- GeneID:   917032
- GeneID:   957673
- GenomeReviews:   AE005174_GR
- GenomeReviews:   BA000007_GR
- KEGG:   ece:Z0778
- KEGG:   ecs:ECs0671
- GeneTree:   EBGT00050000010617
- HOGENOM:   HBG701137
- OMA:   TANQDYE
- ProtClustDB:   PRK10672
- BioCyc:   ECOL83334:ECS0671-MONOMER
- InterPro:   IPR009009
- InterPro:   IPR012997
- InterPro:   IPR007730
- Gene3D:   G3DSA:3.30.70.1070
- TIGRFAMs:   TIGR00413

Pfam domain/function: PF03330 DPBB_1; PF05036 SPOR; SSF50685 Barwin_like; SSF110997 Spore_cell-division_bac

EC number: NA

Molecular weight: Translated: 37553; Mature: 37553

Theoretical pI: Translated: 5.35; Mature: 5.35

Prosite motif: PS51257 PROKAR_LIPOPROTEIN; PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRKQWLGICIAAGMLAACTSDDGQQQTVSVPQPAVCNGPIVEISGADPRFEPLNATANQD
CCCHHHHHHHHHHHHHHHCCCCCCCEEECCCCCCCCCCCEEEECCCCCCCCCCCCCCCCH
YQRDGKSYKIVQDPSRFIQAGLAAIYDAEPGSNLTASGEAFDPTQLTAAHPTLPIPSYAR
HHHCCCCEEEEECHHHHHHHHHHHEEECCCCCCCCCCCCCCCCCEEEECCCCCCCCCHHH
ITNLANGRMIVVRINDRGPYGNDRVISLSRAAADRLNTSNNTKVRIDPIIVAQDGSLSGP
HHHCCCCCEEEEEECCCCCCCCCEEEEEHHHHHHHCCCCCCCEEEEEEEEEECCCCCCCC
GMACTTVAKQTYALPAPPDLSGGAGTSSVSGPQGDILPVSNSTLKSEDPTGAPVTSSGFL
CCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCC
GAPTTLAPGVLEGSEPTPAPQPVVTAPSTTPATSPAMVTPQAASQSASGNFMVQVGAVSD
CCCHHHCCCCCCCCCCCCCCCCEEECCCCCCCCCCCEECCHHHCCCCCCCEEEEECCCCC
QARAQQYQQQLGQKFGVPGRVTQNGAVWRIQLGPFANKAEASTLQQRLQTEAQLQSFITT
HHHHHHHHHHHHHHCCCCCEEECCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHC
AQ
CC
>Mature Secondary Structure
MRKQWLGICIAAGMLAACTSDDGQQQTVSVPQPAVCNGPIVEISGADPRFEPLNATANQD
CCCHHHHHHHHHHHHHHHCCCCCCCEEECCCCCCCCCCCEEEECCCCCCCCCCCCCCCCH
YQRDGKSYKIVQDPSRFIQAGLAAIYDAEPGSNLTASGEAFDPTQLTAAHPTLPIPSYAR
HHHCCCCEEEEECHHHHHHHHHHHEEECCCCCCCCCCCCCCCCCEEEECCCCCCCCCHHH
ITNLANGRMIVVRINDRGPYGNDRVISLSRAAADRLNTSNNTKVRIDPIIVAQDGSLSGP
HHHCCCCCEEEEEECCCCCCCCCEEEEEHHHHHHHCCCCCCCEEEEEEEEEECCCCCCCC
GMACTTVAKQTYALPAPPDLSGGAGTSSVSGPQGDILPVSNSTLKSEDPTGAPVTSSGFL
CCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCC
GAPTTLAPGVLEGSEPTPAPQPVVTAPSTTPATSPAMVTPQAASQSASGNFMVQVGAVSD
CCCHHHCCCCCCCCCCCCCCCCEEECCCCCCCCCCCEECCHHHCCCCCCCEEEEECCCCC
QARAQQYQQQLGQKFGVPGRVTQNGAVWRIQLGPFANKAEASTLQQRLQTEAQLQSFITT
HHHHHHHHHHHHHHCCCCCEEECCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHC
AQ
CC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796