Click here to switch to the map view.

The map label for this gene is srlR [H]

Identifier: 209398484

GI number: 209398484

Start: 3657211

End: 3657984

Strand: Direct

Name: srlR [H]

Synonym: ECH74115_3957

Alternate gene names: 209398484

Gene position: 3657211-3657984 (Clockwise)

Preceding gene: 209399048

Following gene: 209396393

Centisome position: 65.63

GC content: 48.19

Gene sequence:

>774_bases
ATGAAACCTCGTCAGCGTCAAGCCGCCATTCTGGAGTATCTGCAAAAGCAGGGAAAATGCTCGGTTGAAGAATTGGCGCA
ATATTTTGACACCACAGGCACAACTATTCGCAAAGATCTGGTCATTCTGGAACATGCCGGAACCGTCATTCGTACTTATG
GCGGAGTGGTGTTGAATAAAGAGGAATCCGATCCGCCTATCGATCATAAAACACTCATCAACACCCACAAGAAAGAGCTG
ATAGCAGAAGCTGCCGTTGGTTTTATTCATGATGGCGATTCGATCATTCTTGATGCTGGCAGTACCGTTTTGCAGATGGT
GCCTCTGCTCTCGCGCTTTAATAACATCACGGTGATGACCAACAGCCTGCATATCGTCAATGCGTTATCTGAACTGGATA
ATGAACAAACTATCCTGATGCCAGGCGGAACGTTTCGTAAAAAATCGGCCTCATTTCACGGGCAGCTGGCAGAGAATGCC
TTCGAGCATTTCACCTTCGACAAATTATTCATGGGTACCGACGGCATCGATCTCAATGCGGGCGTAACCACCTTCAACGA
GGTCTATACCGTCAGTAAGGCAATGTGCAATGCCGCGCGCGAAGTGATTTTGATGGCGGACTCATCAAAGTTTGGCCGTA
AAAGCCCCAACGTAGTTTGCAGTCTTGAAAGCGTCGATAAGCTGATTACCGACGCAGATATCGATCCGGCGTTTCGTCAG
GCGCTGGAAGAGAAAGGGATCGATGTGATCATAACCGGAGAGAGCAATGAGTGA

Upstream 100 bases:

>100_bases
TCTATCATTGGCGCTTAAACTGAAACGTGGATAATTTCGTTGTGAATGTTACTTGCTTGCGAAGTTATCATTTTGAAACC
TAAATCAGGTAATCACGCCC

Downstream 100 bases:

>100_bases
AGCACTACTGAACGCGGGACGTCAGACGTTAATGCTGGAATTGCAGGAAGCAAGCCGTTTACCGGAACGTCTGGGCGATG
ATTTTGTTCGCGCCGCCAAT

Product: DNA-bindng transcriptional repressor SrlR

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 257; Mature: 257

Protein sequence:

>257_residues
MKPRQRQAAILEYLQKQGKCSVEELAQYFDTTGTTIRKDLVILEHAGTVIRTYGGVVLNKEESDPPIDHKTLINTHKKEL
IAEAAVGFIHDGDSIILDAGSTVLQMVPLLSRFNNITVMTNSLHIVNALSELDNEQTILMPGGTFRKKSASFHGQLAENA
FEHFTFDKLFMGTDGIDLNAGVTTFNEVYTVSKAMCNAAREVILMADSSKFGRKSPNVVCSLESVDKLITDADIDPAFRQ
ALEEKGIDVIITGESNE

Sequences:

>Translated_257_residues
MKPRQRQAAILEYLQKQGKCSVEELAQYFDTTGTTIRKDLVILEHAGTVIRTYGGVVLNKEESDPPIDHKTLINTHKKEL
IAEAAVGFIHDGDSIILDAGSTVLQMVPLLSRFNNITVMTNSLHIVNALSELDNEQTILMPGGTFRKKSASFHGQLAENA
FEHFTFDKLFMGTDGIDLNAGVTTFNEVYTVSKAMCNAAREVILMADSSKFGRKSPNVVCSLESVDKLITDADIDPAFRQ
ALEEKGIDVIITGESNE
>Mature_257_residues
MKPRQRQAAILEYLQKQGKCSVEELAQYFDTTGTTIRKDLVILEHAGTVIRTYGGVVLNKEESDPPIDHKTLINTHKKEL
IAEAAVGFIHDGDSIILDAGSTVLQMVPLLSRFNNITVMTNSLHIVNALSELDNEQTILMPGGTFRKKSASFHGQLAENA
FEHFTFDKLFMGTDGIDLNAGVTTFNEVYTVSKAMCNAAREVILMADSSKFGRKSPNVVCSLESVDKLITDADIDPAFRQ
ALEEKGIDVIITGESNE

Specific function: Unknown

COG id: COG1349

COG function: function code KG; Transcriptional regulators of sugar metabolism

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH deoR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1789059, Length=257, Percent_Identity=99.2217898832685, Blast_Score=526, Evalue=1e-151,
Organism=Escherichia coli, GI1789519, Length=254, Percent_Identity=35.0393700787402, Blast_Score=176, Evalue=2e-45,
Organism=Escherichia coli, GI1789829, Length=251, Percent_Identity=29.8804780876494, Blast_Score=115, Evalue=3e-27,
Organism=Escherichia coli, GI1788069, Length=234, Percent_Identity=31.1965811965812, Blast_Score=113, Evalue=1e-26,
Organism=Escherichia coli, GI226510968, Length=253, Percent_Identity=28.4584980237154, Blast_Score=108, Evalue=3e-25,
Organism=Escherichia coli, GI87082344, Length=254, Percent_Identity=27.1653543307087, Blast_Score=100, Evalue=8e-23,
Organism=Escherichia coli, GI1787540, Length=247, Percent_Identity=29.5546558704453, Blast_Score=95, Evalue=4e-21,
Organism=Escherichia coli, GI1790753, Length=251, Percent_Identity=27.8884462151394, Blast_Score=92, Evalue=5e-20,
Organism=Escherichia coli, GI1790635, Length=257, Percent_Identity=24.5136186770428, Blast_Score=84, Evalue=1e-17,
Organism=Escherichia coli, GI1789170, Length=231, Percent_Identity=27.7056277056277, Blast_Score=75, Evalue=3e-15,
Organism=Escherichia coli, GI1787063, Length=231, Percent_Identity=24.2424242424242, Blast_Score=64, Evalue=7e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014036
- InterPro:   IPR001034
- InterPro:   IPR018356
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00455 DeoR; PF08220 HTH_DeoR [H]

EC number: NA

Molecular weight: Translated: 28265; Mature: 28265

Theoretical pI: Translated: 4.90; Mature: 4.90

Prosite motif: PS00894 HTH_DEOR_1 ; PS51000 HTH_DEOR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKPRQRQAAILEYLQKQGKCSVEELAQYFDTTGTTIRKDLVILEHAGTVIRTYGGVVLNK
CCCHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCHHHHHEEEEECCCCEEEHHCCEEEEC
EESDPPIDHKTLINTHKKELIAEAAVGFIHDGDSIILDAGSTVLQMVPLLSRFNNITVMT
CCCCCCCCHHHHHHHHHHHHHHHHHHHEEECCCEEEEECCHHHHHHHHHHHHCCCEEEEE
NSLHIVNALSELDNEQTILMPGGTFRKKSASFHGQLAENAFEHFTFDKLFMGTDGIDLNA
CCHHHHHHHHHCCCCCEEEECCCCCCCCCCHHHHHHHHHHHHHCCHHHHEECCCCCCCCC
GVTTFNEVYTVSKAMCNAAREVILMADSSKFGRKSPNVVCSLESVDKLITDADIDPAFRQ
CCCHHHHHHHHHHHHHHHHHEEEEEECCCCCCCCCCCEEEEHHHHHHHHHCCCCCHHHHH
ALEEKGIDVIITGESNE
HHHHCCCEEEEECCCCC
>Mature Secondary Structure
MKPRQRQAAILEYLQKQGKCSVEELAQYFDTTGTTIRKDLVILEHAGTVIRTYGGVVLNK
CCCHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCHHHHHEEEEECCCCEEEHHCCEEEEC
EESDPPIDHKTLINTHKKELIAEAAVGFIHDGDSIILDAGSTVLQMVPLLSRFNNITVMT
CCCCCCCCHHHHHHHHHHHHHHHHHHHEEECCCEEEEECCHHHHHHHHHHHHCCCEEEEE
NSLHIVNALSELDNEQTILMPGGTFRKKSASFHGQLAENAFEHFTFDKLFMGTDGIDLNA
CCHHHHHHHHHCCCCCEEEECCCCCCCCCCHHHHHHHHHHHHHCCHHHHEECCCCCCCCC
GVTTFNEVYTVSKAMCNAAREVILMADSSKFGRKSPNVVCSLESVDKLITDADIDPAFRQ
CCCHHHHHHHHHHHHHHHHHEEEEEECCCCCCCCCCCEEEEHHHHHHHHHCCCCCHHHHH
ALEEKGIDVIITGESNE
HHHHCCCEEEEECCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 3062173; 9278503; 9205837 [H]