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The map label for this gene is hgdC [H]

Identifier: 209398356

GI number: 209398356

Start: 5500671

End: 5501438

Strand: Reverse

Name: hgdC [H]

Synonym: ECH74115_5848

Alternate gene names: 209398356

Gene position: 5501438-5500671 (Counterclockwise)

Preceding gene: 209398248

Following gene: 209400337

Centisome position: 98.73

GC content: 55.99

Gene sequence:

>768_bases
GTGACATATTCGATTGGCATTGATTCTGGTTCTACCGCCACCAAAGGGATCTTACTCGCAGACGGCGTGATTACGCGCCG
TTTCCTCGTTCCAACACCCTTTCGACCGGCAACAGCAATTACTGAAGCCTGGGAAACTCTGCGCGAAGGGTTAGAGACAA
CGCCGTTTCTGACGCTCACCGGCTACGGGCGGCAACTGGTGGATTTTGCCGATAAACAAGTGACGGAAATCTCCTGTCAC
GGGCTGGGCGCACGGTTTCTTGCGCCAGCAACGCGCGCGGTAATCGACATCGGTGGTCAGGACAGCAAAGTGATTCAGCT
TGATGATGACGGTAACCTGTGCGATTTCCTGATGAATGACAAATGCGCGGCGGGCACCGGGCGTTTCCTGGAGGTGATCT
CGCGCACGCTTGGCACCAGCGTCGAGCAACTCGACTGCATTACCGAAAATGTCACGCCGCACGCCATCACGAGTATGTGC
ACAGTGTTTGCTGAATCAGAAGTGATCAGCCTGCGCTCAGCGGGCGTCGCGCCAGAAGCGATTCTCGCCGGAGTGATTAA
CGCGATGGCGCGGCGGAGTGCCAATTTCATTGCTCGTCTCTCCTGTGAAGCGCCGATTCTGTTTACTGGTGGCGTTAGTC
ATTGCCAGACGTTTGCCCGGATGCTGGAATCTCACCTGCGAATGCCGGTAAATACCCATCCTGATGCGCAATTTGCTGGC
ACAATTGGCGCGGCGGTAATTGGTCAACGAGTGAGGACACGCCGATGA

Upstream 100 bases:

>100_bases
CATTCCTTATATCGCTATTGAAACAGACTACTCCACCTCGGATGTTGGGCAGCTCAGTACCCGTGTCGCGGCCTTTATTG
AGATGCTGTAAGGAGTAGCA

Downstream 100 bases:

>100_bases
AAGAGTTTTTATTTTTATTTCACTCCACGGTCGGCGTCATACAAACCCGCAAGGCGTTGCAGGCAGCGGGCATGACTTTT
CGCGTCAGCGATATTCCCCG

Product: (R)-2-hydroxyglutaryl-CoA dehydratase activator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 255; Mature: 254

Protein sequence:

>255_residues
MTYSIGIDSGSTATKGILLADGVITRRFLVPTPFRPATAITEAWETLREGLETTPFLTLTGYGRQLVDFADKQVTEISCH
GLGARFLAPATRAVIDIGGQDSKVIQLDDDGNLCDFLMNDKCAAGTGRFLEVISRTLGTSVEQLDCITENVTPHAITSMC
TVFAESEVISLRSAGVAPEAILAGVINAMARRSANFIARLSCEAPILFTGGVSHCQTFARMLESHLRMPVNTHPDAQFAG
TIGAAVIGQRVRTRR

Sequences:

>Translated_255_residues
MTYSIGIDSGSTATKGILLADGVITRRFLVPTPFRPATAITEAWETLREGLETTPFLTLTGYGRQLVDFADKQVTEISCH
GLGARFLAPATRAVIDIGGQDSKVIQLDDDGNLCDFLMNDKCAAGTGRFLEVISRTLGTSVEQLDCITENVTPHAITSMC
TVFAESEVISLRSAGVAPEAILAGVINAMARRSANFIARLSCEAPILFTGGVSHCQTFARMLESHLRMPVNTHPDAQFAG
TIGAAVIGQRVRTRR
>Mature_254_residues
TYSIGIDSGSTATKGILLADGVITRRFLVPTPFRPATAITEAWETLREGLETTPFLTLTGYGRQLVDFADKQVTEISCHG
LGARFLAPATRAVIDIGGQDSKVIQLDDDGNLCDFLMNDKCAAGTGRFLEVISRTLGTSVEQLDCITENVTPHAITSMCT
VFAESEVISLRSAGVAPEAILAGVINAMARRSANFIARLSCEAPILFTGGVSHCQTFARMLESHLRMPVNTHPDAQFAGT
IGAAVIGQRVRTRR

Specific function: Unknown

COG id: COG1924

COG function: function code I; Activator of 2-hydroxyglutaryl-CoA dehydratase (HSP70-class ATPase domain)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI87082426, Length=255, Percent_Identity=98.0392156862745, Blast_Score=509, Evalue=1e-146,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002731
- InterPro:   IPR008275 [H]

Pfam domain/function: PF01869 BcrAD_BadFG [H]

EC number: NA

Molecular weight: Translated: 27333; Mature: 27201

Theoretical pI: Translated: 6.35; Mature: 6.35

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.7 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
5.1 %Cys+Met (Translated Protein)
2.8 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
4.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTYSIGIDSGSTATKGILLADGVITRRFLVPTPFRPATAITEAWETLREGLETTPFLTLT
CEEEEECCCCCCHHCCEEEECCHHHHHEECCCCCCCHHHHHHHHHHHHHCCCCCCEEEEE
GYGRQLVDFADKQVTEISCHGLGARFLAPATRAVIDIGGQDSKVIQLDDDGNLCDFLMND
CCCHHHHHHHHHHHHEEHHCCCCHHHHHHHHHHEEEECCCCCEEEEECCCCCEEHHHHCC
KCAAGTGRFLEVISRTLGTSVEQLDCITENVTPHAITSMCTVFAESEVISLRSAGVAPEA
CCCCCCHHHHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHH
ILAGVINAMARRSANFIARLSCEAPILFTGGVSHCQTFARMLESHLRMPVNTHPDAQFAG
HHHHHHHHHHHHHHHHEEEEECCCCEEEECCHHHHHHHHHHHHHHCCCCCCCCCCCHHHH
TIGAAVIGQRVRTRR
HHHHHHHHHHHHCCC
>Mature Secondary Structure 
TYSIGIDSGSTATKGILLADGVITRRFLVPTPFRPATAITEAWETLREGLETTPFLTLT
EEEEECCCCCCHHCCEEEECCHHHHHEECCCCCCCHHHHHHHHHHHHHCCCCCCEEEEE
GYGRQLVDFADKQVTEISCHGLGARFLAPATRAVIDIGGQDSKVIQLDDDGNLCDFLMND
CCCHHHHHHHHHHHHEEHHCCCCHHHHHHHHHHEEEECCCCCEEEEECCCCCEEHHHHCC
KCAAGTGRFLEVISRTLGTSVEQLDCITENVTPHAITSMCTVFAESEVISLRSAGVAPEA
CCCCCCHHHHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHH
ILAGVINAMARRSANFIARLSCEAPILFTGGVSHCQTFARMLESHLRMPVNTHPDAQFAG
HHHHHHHHHHHHHHHHEEEEECCCCEEEECCHHHHHHHHHHHHHHCCCCCCCCCCCHHHH
TIGAAVIGQRVRTRR
HHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7610040; 9278503 [H]