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The map label for this gene is yjiM [H]

Identifier: 209398248

GI number: 209398248

Start: 5501448

End: 5502599

Strand: Reverse

Name: yjiM [H]

Synonym: ECH74115_5849

Alternate gene names: 209398248

Gene position: 5502599-5501448 (Counterclockwise)

Preceding gene: 209400166

Following gene: 209398356

Centisome position: 98.75

GC content: 53.39

Gene sequence:

>1152_bases
ATGTCACTTGTCACCGATCTACCCGCCATTTTCGATCAGTTCTCTGAAGCTCGCCAGAAAGGCTTTCTCACCGTCATGGA
TCTCAAGGTGCGCGGCATTCCGCTGGTTGGCACTTACTGCACCTTTATGCCGCAAGAGATCCCGATGGCAGCCGGTGCGG
TTGTGGTTTCGCTCTGTTCCACCTCTGATGAAACCATTGAAGAAGCGGAGAAAGATCTGCCGCGCAACCTCTGCCCGCTG
ATTAAAAGTAGCTACGGCTTCGGCAAAACCGATAAATGCCCCTACTTCTACTTTTCGGATCTGGTGGTCGGTGAAACCAC
CTGCGACGGCAAAAAGAAAATGTATGAATACATGGCGGAGTTTAAGCCCGTTCATGTGATGCAGCTGCCAAACAGCGTTA
AAGACGATGCCTCGCGTGCGTTATGGAAAGCCGAGATGCTGCGCTTACAAAAAGCGGTGGAAGAACGTTTTGGGCACGAA
ATTAGCGAAGATGCTCTGCGCGATGCCATTGCGCTGAAAAACCGCGAACGTCGCGCACTGGCCAATTTTTATCATCTTGG
GCAGTTCAATCCTCCGGCGCTTAGCGGCAGCGACATTCTGAAAGTGGTTTACGGCGCAACCTTCCGGTTCGATAAAGAGG
CGTTGATCAATGAACTGGACGCGATGACCGCCCGCATTCGTCAGCAGTGGGAAGAAGGCCAGCGACTGGACCCGCGTCCG
CGCATTTTAATCACCGGCTGCCCGATTGGCGGCGCAGCAGAGAAAGTGGTGCGCGCGATTGAAGAGAATGGCGGCTGGGT
TGTCGGTTATGAAAACTGCACCGGGGCGAAAGCGACCGAGCAATGCGTGGTAGAAACGGGCGATGTCTACGACGCGCTGG
CGGATAAATATCTGGCGATTGGCTGCTCCTGTGTTTCGCCGAACGATCAGCGCCTGAAAATGCTCAGCCAGATGGTGGAA
GAATATCAGGTCGATGGCGTAGTTGATGTGATTTTGCAGGCGTGCCATACCTACGCGGTGGAATCGCTGGCAATTAAACG
TCATGTGCGTCAGCAGCACAACATTCCTTATATCGCTATTGAAACAGACTACTCCACCTCGGATGTTGGGCAGCTCAGTA
CCCGTGTCGCGGCCTTTATTGAGATGCTGTAA

Upstream 100 bases:

>100_bases
TAAGTGGCTAACCGCGAGAGAGATCAAATAAACCATACTAAAAGAATGGTAATAATGTGGCCTCTTTTCATTATCTCCCG
TGGTACGGGGAAGGAAAATC

Downstream 100 bases:

>100_bases
GGAGTAGCAGTGACATATTCGATTGGCATTGATTCTGGTTCTACCGCCACCAAAGGGATCTTACTCGCAGACGGCGTGAT
TACGCGCCGTTTCCTCGTTC

Product: putative 2-hydroxyglutaryl-CoA dehydratase, D-component

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 383; Mature: 382

Protein sequence:

>383_residues
MSLVTDLPAIFDQFSEARQKGFLTVMDLKVRGIPLVGTYCTFMPQEIPMAAGAVVVSLCSTSDETIEEAEKDLPRNLCPL
IKSSYGFGKTDKCPYFYFSDLVVGETTCDGKKKMYEYMAEFKPVHVMQLPNSVKDDASRALWKAEMLRLQKAVEERFGHE
ISEDALRDAIALKNRERRALANFYHLGQFNPPALSGSDILKVVYGATFRFDKEALINELDAMTARIRQQWEEGQRLDPRP
RILITGCPIGGAAEKVVRAIEENGGWVVGYENCTGAKATEQCVVETGDVYDALADKYLAIGCSCVSPNDQRLKMLSQMVE
EYQVDGVVDVILQACHTYAVESLAIKRHVRQQHNIPYIAIETDYSTSDVGQLSTRVAAFIEML

Sequences:

>Translated_383_residues
MSLVTDLPAIFDQFSEARQKGFLTVMDLKVRGIPLVGTYCTFMPQEIPMAAGAVVVSLCSTSDETIEEAEKDLPRNLCPL
IKSSYGFGKTDKCPYFYFSDLVVGETTCDGKKKMYEYMAEFKPVHVMQLPNSVKDDASRALWKAEMLRLQKAVEERFGHE
ISEDALRDAIALKNRERRALANFYHLGQFNPPALSGSDILKVVYGATFRFDKEALINELDAMTARIRQQWEEGQRLDPRP
RILITGCPIGGAAEKVVRAIEENGGWVVGYENCTGAKATEQCVVETGDVYDALADKYLAIGCSCVSPNDQRLKMLSQMVE
EYQVDGVVDVILQACHTYAVESLAIKRHVRQQHNIPYIAIETDYSTSDVGQLSTRVAAFIEML
>Mature_382_residues
SLVTDLPAIFDQFSEARQKGFLTVMDLKVRGIPLVGTYCTFMPQEIPMAAGAVVVSLCSTSDETIEEAEKDLPRNLCPLI
KSSYGFGKTDKCPYFYFSDLVVGETTCDGKKKMYEYMAEFKPVHVMQLPNSVKDDASRALWKAEMLRLQKAVEERFGHEI
SEDALRDAIALKNRERRALANFYHLGQFNPPALSGSDILKVVYGATFRFDKEALINELDAMTARIRQQWEEGQRLDPRPR
ILITGCPIGGAAEKVVRAIEENGGWVVGYENCTGAKATEQCVVETGDVYDALADKYLAIGCSCVSPNDQRLKMLSQMVEE
YQVDGVVDVILQACHTYAVESLAIKRHVRQQHNIPYIAIETDYSTSDVGQLSTRVAAFIEML

Specific function: Unknown

COG id: COG1775

COG function: function code E; Benzoyl-CoA reductase/2-hydroxyglutaryl-CoA dehydratase subunit, BcrC/BadD/HgdB

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: To M.jannaschii MJ0007 [H]

Homologues:

Organism=Escherichia coli, GI87082427, Length=383, Percent_Identity=98.4334203655353, Blast_Score=789, Evalue=0.0,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010327 [H]

Pfam domain/function: PF06050 HGD-D [H]

EC number: NA

Molecular weight: Translated: 42786; Mature: 42655

Theoretical pI: Translated: 4.91; Mature: 4.91

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.9 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
6.0 %Cys+Met (Translated Protein)
2.9 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
5.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSLVTDLPAIFDQFSEARQKGFLTVMDLKVRGIPLVGTYCTFMPQEIPMAAGAVVVSLCS
CCCHHHHHHHHHHHHHHHHCCCEEEEEEEECCCCEEHHHHHHCCHHCCHHHHHHHHHHHC
TSDETIEEAEKDLPRNLCPLIKSSYGFGKTDKCPYFYFSDLVVGETTCDGKKKMYEYMAE
CCHHHHHHHHHHCCHHHHHHHHHCCCCCCCCCCCEEEECCEEECCCCCCHHHHHHHHHHH
FKPVHVMQLPNSVKDDASRALWKAEMLRLQKAVEERFGHEISEDALRDAIALKNRERRAL
CCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCHHHHHH
ANFYHLGQFNPPALSGSDILKVVYGATFRFDKEALINELDAMTARIRQQWEEGQRLDPRP
HHHHHCCCCCCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
RILITGCPIGGAAEKVVRAIEENGGWVVGYENCTGAKATEQCVVETGDVYDALADKYLAI
CEEEEECCCCHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHCCCHHHHHHHHHHHHH
GCSCVSPNDQRLKMLSQMVEEYQVDGVVDVILQACHTYAVESLAIKRHVRQQHNIPYIAI
EEEECCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEE
ETDYSTSDVGQLSTRVAAFIEML
ECCCCCCHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
SLVTDLPAIFDQFSEARQKGFLTVMDLKVRGIPLVGTYCTFMPQEIPMAAGAVVVSLCS
CCHHHHHHHHHHHHHHHHCCCEEEEEEEECCCCEEHHHHHHCCHHCCHHHHHHHHHHHC
TSDETIEEAEKDLPRNLCPLIKSSYGFGKTDKCPYFYFSDLVVGETTCDGKKKMYEYMAE
CCHHHHHHHHHHCCHHHHHHHHHCCCCCCCCCCCEEEECCEEECCCCCCHHHHHHHHHHH
FKPVHVMQLPNSVKDDASRALWKAEMLRLQKAVEERFGHEISEDALRDAIALKNRERRAL
CCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCHHHHHH
ANFYHLGQFNPPALSGSDILKVVYGATFRFDKEALINELDAMTARIRQQWEEGQRLDPRP
HHHHHCCCCCCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
RILITGCPIGGAAEKVVRAIEENGGWVVGYENCTGAKATEQCVVETGDVYDALADKYLAI
CEEEEECCCCHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHCCCHHHHHHHHHHHHH
GCSCVSPNDQRLKMLSQMVEEYQVDGVVDVILQACHTYAVESLAIKRHVRQQHNIPYIAI
EEEECCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEE
ETDYSTSDVGQLSTRVAAFIEML
ECCCCCCHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 7610040; 9278503 [H]