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The map label for this gene is yhdW

Identifier: 209397538

GI number: 209397538

Start: 4255813

End: 4256838

Strand: Direct

Name: yhdW

Synonym: ECH74115_4587

Alternate gene names: 209397538

Gene position: 4255813-4256838 (Clockwise)

Preceding gene: 209396069

Following gene: 209398125

Centisome position: 76.38

GC content: 49.51

Gene sequence:

>1026_bases
ATGAAAAAGATGATGATAGCCACACTGGCTGCCGCCAGCGTGCTGCTTGCCGTTGCAAATCAGGCGCATGCTGGCGCGAC
GCTTGATGCCGTTCAGAAAAAAGGTTTTGTGCAATGCGGGATCAGTGATGGATTACCTGGGTTCTCTTATGCCGATGCAG
ACGGTAAGTTTTCAGGTATTGATGTTGATGTTTGTCGTGGTGTTGCCGCTGCTGTATTTGGTGACGACACGAAAGTGAAA
TATACCCCACTCACAGCAAAAGAACGCTTCACGGCTTTACAGTCAGGGGAAGTGGATTTGCTCTCCCGTAATACGACCTG
GACTTCATCTCGCGATGCCGGGATGGGAATGGCATTTACTGGCGTCACTTATTACGACGGCATTGGCTTCCTGACGCACG
ATAAAGCGGGGCTAAAAAGCGCGAAAGAACTGGATGGCGCTACCGTCTGTATTCAGGCGGGTACTGATACCGAACTCAAC
GTCGCCGACTATTTCAAGGCAAACAATATGAAGTACACACCAGTGACTTTCGATCGTTCTGACGAATCAGCGAAGGCACT
GGAATCCGGTCGCTGCGATACGCTGGCTTCGGATCAATCCCAACTGTATGCCCTGCGCATCAAATTAAGCAACCCGGCTG
AATGGATTGTCTTACCGGAGGTTATCTCTAAAGAACCGCTTGGGCCGGTAGTTCGTCGTGGCGATGATGAATGGTTCTCG
ATTGTACGCTGGACGCTTTTCGCCATGCTAAATGCTGAAGAGATGGGCATCAATTCCCAGAACGTCGATGAAAAAGCGGC
TAATCCAGCAACGCCTGATATGGCACATCTGCTGGGTAAAGAAGGCGATTACGGCAAGGATCTGAAGTTGGATAATAAAT
GGGCCTATAACATCATCAAACAGGTGGGTAACTACTCGGAAATTTTCGAGCGTAACGTAGGTTCAGAAAGCCCGCTGAAA
ATTAAACGTGGGCAAAATAATCTCTGGAATAACGGCGGTATTCAGTACGCACCGCCCGTGCGTTAA

Upstream 100 bases:

>100_bases
AAGCTGGCACTACTTTTGCTTATAAGAGGATGGCCACAGACAGGCAAAAGACGTTTCCCAAACGTCCTATAACGATAATT
TTCGCCTCACAGGAAGCATT

Downstream 100 bases:

>100_bases
GTCGGTGTGAGGTAACGAGCGTCGCTACGGCGGCGCTCTCTTCAGCGTTATGCTTTCCGAGGTTTCTATGTCTCATCGCC
GCTCAACCGTTAAAGGCTCA

Product: amino acid ABC transporter, periplasmic amino acid-binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 341; Mature: 341

Protein sequence:

>341_residues
MKKMMIATLAAASVLLAVANQAHAGATLDAVQKKGFVQCGISDGLPGFSYADADGKFSGIDVDVCRGVAAAVFGDDTKVK
YTPLTAKERFTALQSGEVDLLSRNTTWTSSRDAGMGMAFTGVTYYDGIGFLTHDKAGLKSAKELDGATVCIQAGTDTELN
VADYFKANNMKYTPVTFDRSDESAKALESGRCDTLASDQSQLYALRIKLSNPAEWIVLPEVISKEPLGPVVRRGDDEWFS
IVRWTLFAMLNAEEMGINSQNVDEKAANPATPDMAHLLGKEGDYGKDLKLDNKWAYNIIKQVGNYSEIFERNVGSESPLK
IKRGQNNLWNNGGIQYAPPVR

Sequences:

>Translated_341_residues
MKKMMIATLAAASVLLAVANQAHAGATLDAVQKKGFVQCGISDGLPGFSYADADGKFSGIDVDVCRGVAAAVFGDDTKVK
YTPLTAKERFTALQSGEVDLLSRNTTWTSSRDAGMGMAFTGVTYYDGIGFLTHDKAGLKSAKELDGATVCIQAGTDTELN
VADYFKANNMKYTPVTFDRSDESAKALESGRCDTLASDQSQLYALRIKLSNPAEWIVLPEVISKEPLGPVVRRGDDEWFS
IVRWTLFAMLNAEEMGINSQNVDEKAANPATPDMAHLLGKEGDYGKDLKLDNKWAYNIIKQVGNYSEIFERNVGSESPLK
IKRGQNNLWNNGGIQYAPPVR
>Mature_341_residues
MKKMMIATLAAASVLLAVANQAHAGATLDAVQKKGFVQCGISDGLPGFSYADADGKFSGIDVDVCRGVAAAVFGDDTKVK
YTPLTAKERFTALQSGEVDLLSRNTTWTSSRDAGMGMAFTGVTYYDGIGFLTHDKAGLKSAKELDGATVCIQAGTDTELN
VADYFKANNMKYTPVTFDRSDESAKALESGRCDTLASDQSQLYALRIKLSNPAEWIVLPEVISKEPLGPVVRRGDDEWFS
IVRWTLFAMLNAEEMGINSQNVDEKAANPATPDMAHLLGKEGDYGKDLKLDNKWAYNIIKQVGNYSEIFERNVGSESPLK
IKRGQNNLWNNGGIQYAPPVR

Specific function: Probably part of the binding-protein-dependent transport system ydhWXYZ for an amino acid

COG id: NA

COG function: NA

Gene ontology:

Cell location: Periplasm (Probable)

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the bacterial solute-binding protein 3 family

Homologues:

Organism=Escherichia coli, GI1786876, Length=226, Percent_Identity=26.1061946902655, Blast_Score=78, Evalue=1e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): YHDW_ECO57 (P58068)

Other databases:

- EMBL:   AE005174
- EMBL:   BA000007
- PIR:   A85992
- PIR:   E91146
- RefSeq:   NP_289837.1
- RefSeq:   NP_312168.2
- ProteinModelPortal:   P58068
- SMR:   P58068
- EnsemblBacteria:   EBESCT00000026474
- EnsemblBacteria:   EBESCT00000056228
- GeneID:   916011
- GeneID:   961457
- GenomeReviews:   AE005174_GR
- GenomeReviews:   BA000007_GR
- KEGG:   ece:Z4629
- KEGG:   ecs:ECs4141
- GeneTree:   EBGT00050000009491
- HOGENOM:   HBG286554
- OMA:   PNSKGEW
- BioCyc:   ECOL83334:ECS4141-MONOMER
- InterPro:   IPR001638
- InterPro:   IPR018313
- SMART:   SM00062

Pfam domain/function: PF00497 SBP_bac_3

EC number: NA

Molecular weight: Translated: 37033; Mature: 37033

Theoretical pI: Translated: 5.10; Mature: 5.10

Prosite motif: PS01039 SBP_BACTERIAL_3

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKMMIATLAAASVLLAVANQAHAGATLDAVQKKGFVQCGISDGLPGFSYADADGKFSGI
CCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHCCEEEECCCCCCCCCCCCCCCCCCCCC
DVDVCRGVAAAVFGDDTKVKYTPLTAKERFTALQSGEVDLLSRNTTWTSSRDAGMGMAFT
CHHHHHHHHHHHCCCCCEEEEECCCHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCEEEE
GVTYYDGIGFLTHDKAGLKSAKELDGATVCIQAGTDTELNVADYFKANNMKYTPVTFDRS
CCEEECCCCEEECCCHHHCHHHHCCCEEEEEECCCCCCCCHHHHHCCCCEEECCEEECCC
DESAKALESGRCDTLASDQSQLYALRIKLSNPAEWIVLPEVISKEPLGPVVRRGDDEWFS
CHHHHHHHCCCCCCCCCCCCEEEEEEEEECCCCCEEEEHHHHCCCCCCHHHHCCCHHHHH
IVRWTLFAMLNAEEMGINSQNVDEKAANPATPDMAHLLGKEGDYGKDLKLDNKWAYNIIK
HHHHHHHHHHCHHHHCCCCCCCCHHCCCCCCCHHHHHHCCCCCCCCCCEECCHHHHHHHH
QVGNYSEIFERNVGSESPLKIKRGQNNLWNNGGIQYAPPVR
HHCCHHHHHHHCCCCCCCEEEECCCCCCCCCCCEEECCCCC
>Mature Secondary Structure
MKKMMIATLAAASVLLAVANQAHAGATLDAVQKKGFVQCGISDGLPGFSYADADGKFSGI
CCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHCCEEEECCCCCCCCCCCCCCCCCCCCC
DVDVCRGVAAAVFGDDTKVKYTPLTAKERFTALQSGEVDLLSRNTTWTSSRDAGMGMAFT
CHHHHHHHHHHHCCCCCEEEEECCCHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCEEEE
GVTYYDGIGFLTHDKAGLKSAKELDGATVCIQAGTDTELNVADYFKANNMKYTPVTFDRS
CCEEECCCCEEECCCHHHCHHHHCCCEEEEEECCCCCCCCHHHHHCCCCEEECCEEECCC
DESAKALESGRCDTLASDQSQLYALRIKLSNPAEWIVLPEVISKEPLGPVVRRGDDEWFS
CHHHHHHHCCCCCCCCCCCCEEEEEEEEECCCCCEEEEHHHHCCCCCCHHHHCCCHHHHH
IVRWTLFAMLNAEEMGINSQNVDEKAANPATPDMAHLLGKEGDYGKDLKLDNKWAYNIIK
HHHHHHHHHHCHHHHCCCCCCCCHHCCCCCCCHHHHHHCCCCCCCCCCEECCHHHHHHHH
QVGNYSEIFERNVGSESPLKIKRGQNNLWNNGGIQYAPPVR
HHCCHHHHHHHCCCCCCCEEEECCCCCCCCCCCEEECCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796