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The map label for this gene is yncI

Identifier: 209397232

GI number: 209397232

Start: 278758

End: 279930

Strand: Direct

Name: yncI

Synonym: ECH74115_0262

Alternate gene names: 209397232

Gene position: 278758-279930 (Clockwise)

Preceding gene: 209399210

Following gene: 209395742

Centisome position: 5.0

GC content: 37.6

Gene sequence:

>1173_bases
GTGAGTATTCAAAGTTTGCTTGATTATATTTCAGTGATCCCTGATATACGACAACAAGGAAAGGTTAAACATAAATTATC
TGATATTTTGTTTCTCACCGTATGTGCAGTAATTGCAGGTGCCGATGAGTGGCAGGAAATTGAAGATTTTGGACATGAAA
GACTTGAATGGCTAAAGAAATATGGTGATTTTGATAATGGCATTCCGGTCGATGACACCATTGCACGCGTTGTGAGTAAC
ATTGACAGTTTGGCCTTTGAAAAGATATTTATTGAATGGATGCAGGAGTGCCATGAAATCACTGATGGTGAAATTATAGC
AATAGATGGAAAGACCATAAGAGGCTCCTTTGATAAGGGAAAAAGAAAAGGAGCAATCCATATGGTGAGTGCATTCTCGA
ACGAAAATGGTGTTGTACTGGGGCAGGTAAAAACGGAAGCCAAAAGTAATGAGATTACAGCCATTCCAGAGTTGCTTAAC
CTACTGGATTTAAAGAAAAATTTGATAACCATTGATGCTATGGGCTGTCAGAAAGATATCGCTTCGAAGATCAAAGATAA
AAAAGCAGATTATCTTCTGGCAGTAAAAGGCAATCAGGGGAAATTACATCATGCATTCGAGGAAAAATTTCCTGTAAATG
TGTTTTCTAATTATAAAGGCGATTCGTTTAGTACGCAGGAGATAAGTCATGGAAGAAAAGAAACACGTTTGCATATTGTC
AGTAACGTAACGCCTGAATTTTGTGATTTTGAATTCGAATGGAAGGGATTAAAAAAGCTTTGTGTAGCATTGTCATTCAG
GCAGAAGAAAGAAGATAAATCAGCAGAAGGTGTAAGCATCCGATATTATATTTCATCAAAGGATATGGATGCTAAAGAAT
TTGCACATGCTATCAGAGCGCACTGGCTGATCGAGCACAGTCTTCATTGGGTGTTAGATGTAAAAATGAATGAAGATGCC
AGCCGGATAAGAAGAGGAAACGCAGCCGAAATAATATCTGGAATAAAGAAGATGGCACTGAATTTATTAAGAGATTGCAA
AGACATTAAGGGTGGGGTGAAGAGGAAAAGAAAGAAGGTTGCGTTAAACACATGTTATATAGAAGAAGTGCTTGCATCCT
GCTCAGAGCTTGGGTTTCGAACTGACAAAATGAAAAATTTAACACAGATTTAA

Upstream 100 bases:

>100_bases
AAAATCGTGATGTAAATCACGATTTTCATCCTGGCTTTAACGCCTACAGGTGATCAAAATTTAACCTTTGGAATAACTAA
AAAGATAAAAAGGACGCCAG

Downstream 100 bases:

>100_bases
TTCATGCTCTTGCCCTGCGGGGGGATTATTAAATCTTCCCAGTTTTTTATTATTTAACTCTCGCTCAGCACACTAAACAT
CCCTTTCTGAATTCCCCGCC

Product: putative transposase, IS4 family

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 390; Mature: 389

Protein sequence:

>390_residues
MSIQSLLDYISVIPDIRQQGKVKHKLSDILFLTVCAVIAGADEWQEIEDFGHERLEWLKKYGDFDNGIPVDDTIARVVSN
IDSLAFEKIFIEWMQECHEITDGEIIAIDGKTIRGSFDKGKRKGAIHMVSAFSNENGVVLGQVKTEAKSNEITAIPELLN
LLDLKKNLITIDAMGCQKDIASKIKDKKADYLLAVKGNQGKLHHAFEEKFPVNVFSNYKGDSFSTQEISHGRKETRLHIV
SNVTPEFCDFEFEWKGLKKLCVALSFRQKKEDKSAEGVSIRYYISSKDMDAKEFAHAIRAHWLIEHSLHWVLDVKMNEDA
SRIRRGNAAEIISGIKKMALNLLRDCKDIKGGVKRKRKKVALNTCYIEEVLASCSELGFRTDKMKNLTQI

Sequences:

>Translated_390_residues
MSIQSLLDYISVIPDIRQQGKVKHKLSDILFLTVCAVIAGADEWQEIEDFGHERLEWLKKYGDFDNGIPVDDTIARVVSN
IDSLAFEKIFIEWMQECHEITDGEIIAIDGKTIRGSFDKGKRKGAIHMVSAFSNENGVVLGQVKTEAKSNEITAIPELLN
LLDLKKNLITIDAMGCQKDIASKIKDKKADYLLAVKGNQGKLHHAFEEKFPVNVFSNYKGDSFSTQEISHGRKETRLHIV
SNVTPEFCDFEFEWKGLKKLCVALSFRQKKEDKSAEGVSIRYYISSKDMDAKEFAHAIRAHWLIEHSLHWVLDVKMNEDA
SRIRRGNAAEIISGIKKMALNLLRDCKDIKGGVKRKRKKVALNTCYIEEVLASCSELGFRTDKMKNLTQI
>Mature_389_residues
SIQSLLDYISVIPDIRQQGKVKHKLSDILFLTVCAVIAGADEWQEIEDFGHERLEWLKKYGDFDNGIPVDDTIARVVSNI
DSLAFEKIFIEWMQECHEITDGEIIAIDGKTIRGSFDKGKRKGAIHMVSAFSNENGVVLGQVKTEAKSNEITAIPELLNL
LDLKKNLITIDAMGCQKDIASKIKDKKADYLLAVKGNQGKLHHAFEEKFPVNVFSNYKGDSFSTQEISHGRKETRLHIVS
NVTPEFCDFEFEWKGLKKLCVALSFRQKKEDKSAEGVSIRYYISSKDMDAKEFAHAIRAHWLIEHSLHWVLDVKMNEDAS
RIRRGNAAEIISGIKKMALNLLRDCKDIKGGVKRKRKKVALNTCYIEEVLASCSELGFRTDKMKNLTQI

Specific function: Unknown

COG id: COG5433

COG function: function code L; Transposase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the transposase 11 family

Homologues:

Organism=Escherichia coli, GI1789896, Length=373, Percent_Identity=58.7131367292225, Blast_Score=457, Evalue=1e-130,
Organism=Escherichia coli, GI1787733, Length=373, Percent_Identity=58.1769436997319, Blast_Score=452, Evalue=1e-128,
Organism=Escherichia coli, GI1786924, Length=253, Percent_Identity=60.4743083003953, Blast_Score=317, Evalue=9e-88,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): YNCI_ECO57 (Q8X7R5)

Other databases:

- EMBL:   AE005174
- EMBL:   BA000007
- PIR:   C85510
- PIR:   E90659
- RefSeq:   NP_285935.1
- RefSeq:   NP_308272.1
- EnsemblBacteria:   EBESCT00000027981
- EnsemblBacteria:   EBESCT00000058219
- GeneID:   914277
- GeneID:   957027
- GenomeReviews:   AE005174_GR
- GenomeReviews:   BA000007_GR
- KEGG:   ece:Z0275
- KEGG:   ecs:ECs0245
- GeneTree:   EBGT00050000009716
- HOGENOM:   HBG702545
- OMA:   IVSIDAM
- ProtClustDB:   CLSK382825
- BioCyc:   ECOL83334:ECS0245-MONOMER
- InterPro:   IPR002559

Pfam domain/function: PF01609 Transposase_11

EC number: NA

Molecular weight: Translated: 44238; Mature: 44107

Theoretical pI: Translated: 8.03; Mature: 8.03

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.1 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
2.1 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSIQSLLDYISVIPDIRQQGKVKHKLSDILFLTVCAVIAGADEWQEIEDFGHERLEWLKK
CCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHH
YGDFDNGIPVDDTIARVVSNIDSLAFEKIFIEWMQECHEITDGEIIAIDGKTIRGSFDKG
HCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCEEECCCCCC
KRKGAIHMVSAFSNENGVVLGQVKTEAKSNEITAIPELLNLLDLKKNLITIDAMGCQKDI
CCCCCEEEEEEECCCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHEEEEECCCCHHHH
ASKIKDKKADYLLAVKGNQGKLHHAFEEKFPVNVFSNYKGDSFSTQEISHGRKETRLHIV
HHHHHHCCCCEEEEEECCCCCCHHHHHHCCCCHHHCCCCCCCCCHHHHHCCCHHHHEEEE
SNVTPEFCDFEFEWKGLKKLCVALSFRQKKEDKSAEGVSIRYYISSKDMDAKEFAHAIRA
CCCCHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCCCCHHHHHHHHHH
HWLIEHSLHWVLDVKMNEDASRIRRGNAAEIISGIKKMALNLLRDCKDIKGGVKRKRKKV
HHHHHCCCEEEEEEEECCCHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ALNTCYIEEVLASCSELGFRTDKMKNLTQI
HHHHHHHHHHHHHHHHCCCCHHHHHHHCCC
>Mature Secondary Structure 
SIQSLLDYISVIPDIRQQGKVKHKLSDILFLTVCAVIAGADEWQEIEDFGHERLEWLKK
CHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHH
YGDFDNGIPVDDTIARVVSNIDSLAFEKIFIEWMQECHEITDGEIIAIDGKTIRGSFDKG
HCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCEEECCCCCC
KRKGAIHMVSAFSNENGVVLGQVKTEAKSNEITAIPELLNLLDLKKNLITIDAMGCQKDI
CCCCCEEEEEEECCCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHEEEEECCCCHHHH
ASKIKDKKADYLLAVKGNQGKLHHAFEEKFPVNVFSNYKGDSFSTQEISHGRKETRLHIV
HHHHHHCCCCEEEEEECCCCCCHHHHHHCCCCHHHCCCCCCCCCHHHHHCCCHHHHEEEE
SNVTPEFCDFEFEWKGLKKLCVALSFRQKKEDKSAEGVSIRYYISSKDMDAKEFAHAIRA
CCCCHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCCCCHHHHHHHHHH
HWLIEHSLHWVLDVKMNEDASRIRRGNAAEIISGIKKMALNLLRDCKDIKGGVKRKRKKV
HHHHHCCCEEEEEEEECCCHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ALNTCYIEEVLASCSELGFRTDKMKNLTQI
HHHHHHHHHHHHHHHHCCCCHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796