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The map label for this gene is lpfA [H]

Identifier: 209397169

GI number: 209397169

Start: 4560616

End: 4561140

Strand: Reverse

Name: lpfA [H]

Synonym: ECH74115_4922

Alternate gene names: 209397169

Gene position: 4561140-4560616 (Counterclockwise)

Preceding gene: 209396715

Following gene: 209398252

Centisome position: 81.86

GC content: 46.86

Gene sequence:

>525_bases
ATGAAAAAGGTCGTTTTTGCCTTAACCGCACTGGCGTTAACTTCTGGCACTGTATTCGCAGCAGAGTCTGGTGACGGCAC
GGTTAAATTTACAGGCGAGATCGTGGATTCACCTTGCGTACTGTCCGTTGACTCTCAGAACCAGGAAGTTGTGTTGGGTC
AGGTACAAAAATCTGTATTTGCTGCGGTTGGTGACAAATCCCCGGCAAAACCTTTCGAAATCAAACTGGAAGATTGCGAT
ACCACCACGATGAAAAAAGCCAATGTGAGCTTTAGTGGTGTTGGTGATGCAGATAAATCTGATCTGATTTCTGTTAGCAC
TGAAGCGGGCGCGGCCAAAGGTGTTGGTATCGGTATTTATGATAACAGCAATACCCTGGTCGCTCTTAACGGTGGTAAAG
CAAGTGTTGATCTGAGTAAAGGCCAGACGGTTCTCTACTTTACCGCTAACTACGTTTCTACTCTGGCAACGGTAACGACC
GGTTACGGCAATGCGCAGGTCGATTTCAACCTGTCTTACGAGTAA

Upstream 100 bases:

>100_bases
TTTATTATTCGTATTTCATTGTATAATCCTTCCTTCAAAGTTGTCGATTTTAATACATCAAGATTTTCTTTTTAATGTAA
TTTTTTAAATGGAGTTTTTC

Downstream 100 bases:

>100_bases
TCGTCCGTTTTACAAATGGCGGCGTAATTGCCGCCATTAGTCGTCAAAGTTCATGGATCGAATGATGAAAAGTAAATTTG
TTGCGTTGGCTCTCTCTCTG

Product: fimbrial protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 174; Mature: 174

Protein sequence:

>174_residues
MKKVVFALTALALTSGTVFAAESGDGTVKFTGEIVDSPCVLSVDSQNQEVVLGQVQKSVFAAVGDKSPAKPFEIKLEDCD
TTTMKKANVSFSGVGDADKSDLISVSTEAGAAKGVGIGIYDNSNTLVALNGGKASVDLSKGQTVLYFTANYVSTLATVTT
GYGNAQVDFNLSYE

Sequences:

>Translated_174_residues
MKKVVFALTALALTSGTVFAAESGDGTVKFTGEIVDSPCVLSVDSQNQEVVLGQVQKSVFAAVGDKSPAKPFEIKLEDCD
TTTMKKANVSFSGVGDADKSDLISVSTEAGAAKGVGIGIYDNSNTLVALNGGKASVDLSKGQTVLYFTANYVSTLATVTT
GYGNAQVDFNLSYE
>Mature_174_residues
MKKVVFALTALALTSGTVFAAESGDGTVKFTGEIVDSPCVLSVDSQNQEVVLGQVQKSVFAAVGDKSPAKPFEIKLEDCD
TTTMKKANVSFSGVGDADKSDLISVSTEAGAAKGVGIGIYDNSNTLVALNGGKASVDLSKGQTVLYFTANYVSTLATVTT
GYGNAQVDFNLSYE

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Fimbrium (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the fimbrial protein family [H]

Homologues:

Organism=Escherichia coli, GI87082421, Length=177, Percent_Identity=32.2033898305085, Blast_Score=100, Evalue=9e-23,
Organism=Escherichia coli, GI87081753, Length=160, Percent_Identity=38.75, Blast_Score=97, Evalue=7e-22,
Organism=Escherichia coli, GI87081805, Length=174, Percent_Identity=33.9080459770115, Blast_Score=91, Evalue=3e-20,
Organism=Escherichia coli, GI1790769, Length=153, Percent_Identity=35.9477124183007, Blast_Score=79, Evalue=2e-16,
Organism=Escherichia coli, GI1787781, Length=175, Percent_Identity=31.4285714285714, Blast_Score=77, Evalue=6e-16,
Organism=Escherichia coli, GI1789422, Length=182, Percent_Identity=35.1648351648352, Blast_Score=72, Evalue=1e-14,
Organism=Escherichia coli, GI1790773, Length=158, Percent_Identity=28.4810126582279, Blast_Score=70, Evalue=8e-14,
Organism=Escherichia coli, GI87081804, Length=179, Percent_Identity=27.9329608938547, Blast_Score=60, Evalue=8e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR008966
- InterPro:   IPR000259
- InterPro:   IPR014779 [H]

Pfam domain/function: PF00419 Fimbrial [H]

EC number: NA

Molecular weight: Translated: 17969; Mature: 17969

Theoretical pI: Translated: 4.33; Mature: 4.33

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKVVFALTALALTSGTVFAAESGDGTVKFTGEIVDSPCVLSVDSQNQEVVLGQVQKSVF
CCHHHHHHHHHHHCCCEEEEEECCCCEEEEEEEECCCCEEEEECCCCCEEEEEHHHHHHH
AAVGDKSPAKPFEIKLEDCDTTTMKKANVSFSGVGDADKSDLISVSTEAGAAKGVGIGIY
HHCCCCCCCCCEEEEEECCCCCEEEECCCEEECCCCCCCCCEEEEECCCCCCCCCEEEEE
DNSNTLVALNGGKASVDLSKGQTVLYFTANYVSTLATVTTGYGNAQVDFNLSYE
ECCCEEEEEECCCEEEEECCCCEEEEEECHHHHHHHHEECCCCCEEEEEEEECC
>Mature Secondary Structure
MKKVVFALTALALTSGTVFAAESGDGTVKFTGEIVDSPCVLSVDSQNQEVVLGQVQKSVF
CCHHHHHHHHHHHCCCEEEEEECCCCEEEEEEEECCCCEEEEECCCCCEEEEEHHHHHHH
AAVGDKSPAKPFEIKLEDCDTTTMKKANVSFSGVGDADKSDLISVSTEAGAAKGVGIGIY
HHCCCCCCCCCEEEEEECCCCCEEEECCCEEECCCCCCCCCEEEEECCCCCCCCCEEEEE
DNSNTLVALNGGKASVDLSKGQTVLYFTANYVSTLATVTTGYGNAQVDFNLSYE
ECCCEEEEEECCCEEEEECCCCEEEEEECHHHHHHHHEECCCCCEEEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7721701; 11677609 [H]