Click here to switch to the map view.

The map label for this gene is yadE [H]

Identifier: 209396198

GI number: 209396198

Start: 149434

End: 150663

Strand: Direct

Name: yadE [H]

Synonym: ECH74115_0138

Alternate gene names: 209396198

Gene position: 149434-150663 (Clockwise)

Preceding gene: 209395904

Following gene: 209397486

Centisome position: 2.68

GC content: 49.27

Gene sequence:

>1230_bases
ATGTACAAACAAGCTGTTATTCTCCTGCTGATGCTGTTTACCGCAAGTGTCAGTGCCGCGTTACCTGCCCGTTATATGCA
AACCATCGAAAATGCTGCGGTCTGGGCGCAAATTGGTGACAAGATGGTGACCGTGGGGAATATTCGGGCCGGACAAATCA
TTGCCGTGGAGCCCACTGCCGCAAGTTATTACGCATTTAATTTTGGCTTTGATAAAGGGTTTATCGATAAAGGTCATCTT
GAGCCGGTTCAGGGGCGACAAAAAGTTGAAGACGGTTTGGGTGACCTCAACAAGCCGCTGAGTAATCAGAACTTAGTTAC
CTGGAAAGATACGCCGGTCTATAACGCGCCGAGTGTGGGCAGTGCGCCATTTGGGGTACTGGCGGACAATTTGCGCTACC
CGATTTTGCATAAACTGAAAGACAGGTTAAATCAAACCTGGTATCAGATCCGTATTGGCGATCGACTGGCCTATATCAGC
GCGCTGGATGCCCAACCCGATAATGGCCTTCCGGTGCTAACCTATCACCATATTCTGCGCGACGAAGAAAACACCCGTTT
TCGCCATACTTCGACGACCACCTCGGTACGCGCTTTCAATAACCAGATGGCCTGGCTGCGCGACAGGGGATACGCGACAC
TGAGCATGGTGCAGCTGGAAGGTTACGTGAAGAATAAGATCAATCTTCCTGCGCGAGCGGTGGTGATTACCTTTGATGAT
GGCCTCAAGTCAGTGAGCCGCTATGCGTATCCTGTGTTGAAACAATATGGCATGAAGGCGACGGCGTTTATTGTTACCTC
GCGCATCAAACGTCACCCGCAGAAGTGGGAACCAAAATCGCTGCAATTTATGAGCGTTTCTGAGCTTAACGAAATTCGCG
ATGTATTTGATTTCCAGTCACATACCCATTTTTTGCATCGGGTAGATGGTTATCGCCGACCCATATTACTGAGCCGTAGT
GAGCACAATATTCTGTTTGATTTTGCACGTTCACGTCGCGCTCTGGCGCAATTTAATCCGCATGTCTGGTATCTTTCGTA
TCCGTTTGGCGGCTTTAATGACAAAGCCGTGAAGGCAGCAAACGATGCCGGATTTCACCTGGCGGTGACAACCATGAAAG
GCAAAGTAAAACCGGGGGATAATCCGTTGTTACTAAAACGACTTTATATCTTAAGAACGGATTCGCTGGAGACGATGTCG
CGGCTGGTGAGTAACCAGCCGCAGGGATAA

Upstream 100 bases:

>100_bases
GCCTTTCGTCCTCAAACATAATTTGTATGAGTATTAACCCGCGATTCTGATGGCGCTTTTGCTACAATAAAAGCGTTGTT
TCACCCTCGGTGATTTTTTC

Downstream 100 bases:

>100_bases
CAATCAAGCAACCTGTACCGGAATCGCTTTCGCGGTACGTTTCATTTCATTGTCGCCTTCAAAATAGGCGACGTTGGGTC
GCCAGGTGCGAGCTTCTTCA

Product: polysaccharide deacetylase domain protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 409; Mature: 409

Protein sequence:

>409_residues
MYKQAVILLLMLFTASVSAALPARYMQTIENAAVWAQIGDKMVTVGNIRAGQIIAVEPTAASYYAFNFGFDKGFIDKGHL
EPVQGRQKVEDGLGDLNKPLSNQNLVTWKDTPVYNAPSVGSAPFGVLADNLRYPILHKLKDRLNQTWYQIRIGDRLAYIS
ALDAQPDNGLPVLTYHHILRDEENTRFRHTSTTTSVRAFNNQMAWLRDRGYATLSMVQLEGYVKNKINLPARAVVITFDD
GLKSVSRYAYPVLKQYGMKATAFIVTSRIKRHPQKWEPKSLQFMSVSELNEIRDVFDFQSHTHFLHRVDGYRRPILLSRS
EHNILFDFARSRRALAQFNPHVWYLSYPFGGFNDKAVKAANDAGFHLAVTTMKGKVKPGDNPLLLKRLYILRTDSLETMS
RLVSNQPQG

Sequences:

>Translated_409_residues
MYKQAVILLLMLFTASVSAALPARYMQTIENAAVWAQIGDKMVTVGNIRAGQIIAVEPTAASYYAFNFGFDKGFIDKGHL
EPVQGRQKVEDGLGDLNKPLSNQNLVTWKDTPVYNAPSVGSAPFGVLADNLRYPILHKLKDRLNQTWYQIRIGDRLAYIS
ALDAQPDNGLPVLTYHHILRDEENTRFRHTSTTTSVRAFNNQMAWLRDRGYATLSMVQLEGYVKNKINLPARAVVITFDD
GLKSVSRYAYPVLKQYGMKATAFIVTSRIKRHPQKWEPKSLQFMSVSELNEIRDVFDFQSHTHFLHRVDGYRRPILLSRS
EHNILFDFARSRRALAQFNPHVWYLSYPFGGFNDKAVKAANDAGFHLAVTTMKGKVKPGDNPLLLKRLYILRTDSLETMS
RLVSNQPQG
>Mature_409_residues
MYKQAVILLLMLFTASVSAALPARYMQTIENAAVWAQIGDKMVTVGNIRAGQIIAVEPTAASYYAFNFGFDKGFIDKGHL
EPVQGRQKVEDGLGDLNKPLSNQNLVTWKDTPVYNAPSVGSAPFGVLADNLRYPILHKLKDRLNQTWYQIRIGDRLAYIS
ALDAQPDNGLPVLTYHHILRDEENTRFRHTSTTTSVRAFNNQMAWLRDRGYATLSMVQLEGYVKNKINLPARAVVITFDD
GLKSVSRYAYPVLKQYGMKATAFIVTSRIKRHPQKWEPKSLQFMSVSELNEIRDVFDFQSHTHFLHRVDGYRRPILLSRS
EHNILFDFARSRRALAQFNPHVWYLSYPFGGFNDKAVKAANDAGFHLAVTTMKGKVKPGDNPLLLKRLYILRTDSLETMS
RLVSNQPQG

Specific function: Unknown

COG id: COG0726

COG function: function code G; Predicted xylanase/chitin deacetylase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1786322, Length=409, Percent_Identity=98.7775061124694, Blast_Score=837, Evalue=0.0,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011330
- InterPro:   IPR002509 [H]

Pfam domain/function: PF01522 Polysacc_deac_1 [H]

EC number: NA

Molecular weight: Translated: 46441; Mature: 46441

Theoretical pI: Translated: 10.21; Mature: 10.21

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MYKQAVILLLMLFTASVSAALPARYMQTIENAAVWAQIGDKMVTVGNIRAGQIIAVEPTA
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEECCCCCEEEEECCCC
ASYYAFNFGFDKGFIDKGHLEPVQGRQKVEDGLGDLNKPLSNQNLVTWKDTPVYNAPSVG
CEEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCEEEECCCCCCCCCCCC
SAPFGVLADNLRYPILHKLKDRLNQTWYQIRIGDRLAYISALDAQPDNGLPVLTYHHILR
CCCHHHHHCCCCCHHHHHHHHHHCCEEEEEEECCEEEEEEEECCCCCCCCEEEEEHHHHC
DEENTRFRHTSTTTSVRAFNNQMAWLRDRGYATLSMVQLEGYVKNKINLPARAVVITFDD
CCCCCEEEECCCCHHHHHHCCCCHHHHCCCCEEEEEEEEHHHHHCCCCCCEEEEEEEECC
GLKSVSRYAYPVLKQYGMKATAFIVTSRIKRHPQKWEPKSLQFMSVSELNEIRDVFDFQS
HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCEEEEEHHHHHHHHHHHHHHH
HTHFLHRVDGYRRPILLSRSEHNILFDFARSRRALAQFNPHVWYLSYPFGGFNDKAVKAA
HHHHHHHHCCCCCCEEEECCCCCEEEHHHHHHHHHHHCCCEEEEEECCCCCCCCCCEEEC
NDAGFHLAVTTMKGKVKPGDNPLLLKRLYILRTDSLETMSRLVSNQPQG
CCCCEEEEEEEEECCCCCCCCHHHEEEEEEHCCCCHHHHHHHHCCCCCC
>Mature Secondary Structure
MYKQAVILLLMLFTASVSAALPARYMQTIENAAVWAQIGDKMVTVGNIRAGQIIAVEPTA
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEECCCCCEEEEECCCC
ASYYAFNFGFDKGFIDKGHLEPVQGRQKVEDGLGDLNKPLSNQNLVTWKDTPVYNAPSVG
CEEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCEEEECCCCCCCCCCCC
SAPFGVLADNLRYPILHKLKDRLNQTWYQIRIGDRLAYISALDAQPDNGLPVLTYHHILR
CCCHHHHHCCCCCHHHHHHHHHHCCEEEEEEECCEEEEEEEECCCCCCCCEEEEEHHHHC
DEENTRFRHTSTTTSVRAFNNQMAWLRDRGYATLSMVQLEGYVKNKINLPARAVVITFDD
CCCCCEEEECCCCHHHHHHCCCCHHHHCCCCEEEEEEEEHHHHHCCCCCCEEEEEEEECC
GLKSVSRYAYPVLKQYGMKATAFIVTSRIKRHPQKWEPKSLQFMSVSELNEIRDVFDFQS
HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCEEEEEHHHHHHHHHHHHHHH
HTHFLHRVDGYRRPILLSRSEHNILFDFARSRRALAQFNPHVWYLSYPFGGFNDKAVKAA
HHHHHHHHCCCCCCEEEECCCCCEEEHHHHHHHHHHHCCCEEEEEECCCCCCCCCCEEEC
NDAGFHLAVTTMKGKVKPGDNPLLLKRLYILRTDSLETMSRLVSNQPQG
CCCCEEEEEEEEECCCCCCCCHHHEEEEEEHCCCCHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8202364; 9278503 [H]