Click here to switch to the map view.

The map label for this gene is ydiS [H]

Identifier: 209396032

GI number: 209396032

Start: 2287404

End: 2288693

Strand: Direct

Name: ydiS [H]

Synonym: ECH74115_2416

Alternate gene names: 209396032

Gene position: 2287404-2288693 (Clockwise)

Preceding gene: 209399457

Following gene: 209396754

Centisome position: 41.05

GC content: 54.26

Gene sequence:

>1290_bases
ATGTCGGATGACAAATTTGATGCCATTGTGGTCGGTGCGGGCGTTGCTGGTAGCGTTGCCGCACTGGTCATGGCGCGAGC
CGGGCTGGATATCCTGGTGATAGAACGCGGCGACAGTGCCGGATGTAAAAACATGACCGGCGGGCGTCTTTATGCCCACA
CACTTGAAGCAATCATTCCAGGCTTTGCAGCATCAGCGCCGGTAGAACGCAAGGTCACACGCGAGAAAATCTCCTTCTTA
ACCGAAGAGAGCGCCGTTACCCTCGATTTTCACCGCGAGCAACCAGATGTTCCGCAACACGCATCTTATACCGTATTGCG
TAATCGTCTGGACCCGTGGTTGATGGAACAAGCCGAGCAGGCGGGCGCACAGTTTATCCCGGGAGTTCGCGTCGATGCGT
TGGTTCGTGAAGGAAACAAGGTCACTGGAGTCCAGGCCGGGGATGATATTCTCGAAGCCAATGTGGTGATTTTAGCCGAT
GGCGTTAACTCGATGCTTGGCCGCTCGCTGGGAATGGTTCCCGCTTCCGATCCGCATCATTACGCTGTTGGTGTTAAAGA
GGTTATTGGCCTCACACCAGAACAGATCAACGATCGCTTTAATATTACGGGCGAGGAAGGTGCCGCCTGGCTGTTTGCCG
GTTCCCCTTCTGACGGCCTGATGGGCGGGGGATTTCTCTATACCAACAAGGATTCCATATCCTTGGGGCTGGTTTGTGGA
TTGGCTGATATCGCCCATGCGCAAAAAAGCGTGCCGCAAATGCTGGAAGATTTTAAACAACACCCCGCCATTCGCCCGCT
GATTAGCGGCGGCAAACTGCTTGAATATTCCGCGCATATGGTGCCAGAAGGCGGTCTGGCGATGGTACCGCAACTGGTTA
ACGATGGCGTGATGATCGTTGGTGACGCCGCAGGCTTCTGCCTGAATTTGGGTTTTACGGTCCGCGGCATGGATTTAGCC
ATTGCATCGGCTCAGGCTGCCGCCACAACAGTGATCGCCGCCAAAGAACGCGCGGATTTCTCCGCCAGCAGTCTGGCGCA
ATACAAACGTGAGCTGGAACAAAGCTGCGTCATGCGTGATATGCAGCATTTTCGCAAGATCCCGGCGCTGATGGAAAACC
CGCGCCTGTTTAGCCAATACCCACGAATGGTAGCCGACATCATGAACGAGATGTTCACCATTGACGGTAAGCCTAACCAG
CCGGTACGCAAAATGATCATGGGACACGCGAAGAAAATTGGGCTGATCAACTTGCTGAAAGATGGCATTAAGGGAGCAAC
CGCGCTATGA

Upstream 100 bases:

>100_bases
ATCTACAAAGTCGTCCCTGCCCTGATTAGCCAGTTGAGCCGCTAATTCCCCTTTCAACCACATCTCCCGCTGTAAACGCA
GCGGGAAGGGAGCATAACGC

Downstream 100 bases:

>100_bases
GCCAGAACGCTACGGTTAACGTCGACATCAAATTAGGCGTCAATAAATTCCATGTTGATGAGGGCCACCCGCATATCATT
TTGGCGGCAAATCCCGATAT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 429; Mature: 428

Protein sequence:

>429_residues
MSDDKFDAIVVGAGVAGSVAALVMARAGLDILVIERGDSAGCKNMTGGRLYAHTLEAIIPGFAASAPVERKVTREKISFL
TEESAVTLDFHREQPDVPQHASYTVLRNRLDPWLMEQAEQAGAQFIPGVRVDALVREGNKVTGVQAGDDILEANVVILAD
GVNSMLGRSLGMVPASDPHHYAVGVKEVIGLTPEQINDRFNITGEEGAAWLFAGSPSDGLMGGGFLYTNKDSISLGLVCG
LADIAHAQKSVPQMLEDFKQHPAIRPLISGGKLLEYSAHMVPEGGLAMVPQLVNDGVMIVGDAAGFCLNLGFTVRGMDLA
IASAQAAATTVIAAKERADFSASSLAQYKRELEQSCVMRDMQHFRKIPALMENPRLFSQYPRMVADIMNEMFTIDGKPNQ
PVRKMIMGHAKKIGLINLLKDGIKGATAL

Sequences:

>Translated_429_residues
MSDDKFDAIVVGAGVAGSVAALVMARAGLDILVIERGDSAGCKNMTGGRLYAHTLEAIIPGFAASAPVERKVTREKISFL
TEESAVTLDFHREQPDVPQHASYTVLRNRLDPWLMEQAEQAGAQFIPGVRVDALVREGNKVTGVQAGDDILEANVVILAD
GVNSMLGRSLGMVPASDPHHYAVGVKEVIGLTPEQINDRFNITGEEGAAWLFAGSPSDGLMGGGFLYTNKDSISLGLVCG
LADIAHAQKSVPQMLEDFKQHPAIRPLISGGKLLEYSAHMVPEGGLAMVPQLVNDGVMIVGDAAGFCLNLGFTVRGMDLA
IASAQAAATTVIAAKERADFSASSLAQYKRELEQSCVMRDMQHFRKIPALMENPRLFSQYPRMVADIMNEMFTIDGKPNQ
PVRKMIMGHAKKIGLINLLKDGIKGATAL
>Mature_428_residues
SDDKFDAIVVGAGVAGSVAALVMARAGLDILVIERGDSAGCKNMTGGRLYAHTLEAIIPGFAASAPVERKVTREKISFLT
EESAVTLDFHREQPDVPQHASYTVLRNRLDPWLMEQAEQAGAQFIPGVRVDALVREGNKVTGVQAGDDILEANVVILADG
VNSMLGRSLGMVPASDPHHYAVGVKEVIGLTPEQINDRFNITGEEGAAWLFAGSPSDGLMGGGFLYTNKDSISLGLVCGL
ADIAHAQKSVPQMLEDFKQHPAIRPLISGGKLLEYSAHMVPEGGLAMVPQLVNDGVMIVGDAAGFCLNLGFTVRGMDLAI
ASAQAAATTVIAAKERADFSASSLAQYKRELEQSCVMRDMQHFRKIPALMENPRLFSQYPRMVADIMNEMFTIDGKPNQP
VRKMIMGHAKKIGLINLLKDGIKGATAL

Specific function: Probably accepts electrons from ydiQ/ydiR and reduces a quinone [H]

COG id: COG0644

COG function: function code C; Dehydrogenases (flavoproteins)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ETF-QO/fixC family [H]

Homologues:

Organism=Homo sapiens, GI119703746, Length=400, Percent_Identity=26.25, Blast_Score=115, Evalue=6e-26,
Organism=Escherichia coli, GI1787991, Length=429, Percent_Identity=99.0675990675991, Blast_Score=872, Evalue=0.0,
Organism=Escherichia coli, GI1786227, Length=429, Percent_Identity=61.3053613053613, Blast_Score=534, Evalue=1e-153,
Organism=Escherichia coli, GI87082155, Length=428, Percent_Identity=41.8224299065421, Blast_Score=334, Evalue=7e-93,
Organism=Caenorhabditis elegans, GI25144720, Length=444, Percent_Identity=25.6756756756757, Blast_Score=116, Evalue=3e-26,
Organism=Saccharomyces cerevisiae, GI6324932, Length=416, Percent_Identity=25.2403846153846, Blast_Score=103, Evalue=4e-23,
Organism=Drosophila melanogaster, GI24652256, Length=408, Percent_Identity=27.2058823529412, Blast_Score=118, Evalue=8e-27,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002938
- InterPro:   IPR003042 [H]

Pfam domain/function: PF01494 FAD_binding_3 [H]

EC number: 1.5.5.-

Molecular weight: Translated: 45910; Mature: 45778

Theoretical pI: Translated: 5.82; Mature: 5.82

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
4.7 %Met     (Translated Protein)
5.6 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
4.4 %Met     (Mature Protein)
5.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSDDKFDAIVVGAGVAGSVAALVMARAGLDILVIERGDSAGCKNMTGGRLYAHTLEAIIP
CCCCCEEEEEEECCCHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCHHHHHHHHHHC
GFAASAPVERKVTREKISFLTEESAVTLDFHREQPDVPQHASYTVLRNRLDPWLMEQAEQ
CCCCCCCHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCHHHHHHHCCCHHHHHHHHH
AGAQFIPGVRVDALVREGNKVTGVQAGDDILEANVVILADGVNSMLGRSLGMVPASDPHH
CCHHCCCCCHHHHHHHCCCEEECCCCCCCHHCCCEEEEECCHHHHHHHHCCCCCCCCCCC
YAVGVKEVIGLTPEQINDRFNITGEEGAAWLFAGSPSDGLMGGGFLYTNKDSISLGLVCG
CCCCHHHHHCCCHHHCCCCEEECCCCCCEEEEECCCCCCCCCCEEEEECCCCCCHHHHHH
LADIAHAQKSVPQMLEDFKQHPAIRPLISGGKLLEYSAHMVPEGGLAMVPQLVNDGVMIV
HHHHHHHHHHHHHHHHHHHHCCCCCHHHCCCCEEEEHHHCCCCCCHHHHHHHHCCCEEEE
GDAAGFCLNLGFTVRGMDLAIASAQAAATTVIAAKERADFSASSLAQYKRELEQSCVMRD
ECCCCEEEECCEEEECCCEEEHHHHHHHHHHEEEHHCCCCCHHHHHHHHHHHHHHHHHHH
MQHFRKIPALMENPRLFSQYPRMVADIMNEMFTIDGKPNQPVRKMIMGHAKKIGLINLLK
HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHEECCCCCCHHHHHHHHHHHHHHHHHHHHH
DGIKGATAL
HCCCCCCCC
>Mature Secondary Structure 
SDDKFDAIVVGAGVAGSVAALVMARAGLDILVIERGDSAGCKNMTGGRLYAHTLEAIIP
CCCCEEEEEEECCCHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCHHHHHHHHHHC
GFAASAPVERKVTREKISFLTEESAVTLDFHREQPDVPQHASYTVLRNRLDPWLMEQAEQ
CCCCCCCHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCHHHHHHHCCCHHHHHHHHH
AGAQFIPGVRVDALVREGNKVTGVQAGDDILEANVVILADGVNSMLGRSLGMVPASDPHH
CCHHCCCCCHHHHHHHCCCEEECCCCCCCHHCCCEEEEECCHHHHHHHHCCCCCCCCCCC
YAVGVKEVIGLTPEQINDRFNITGEEGAAWLFAGSPSDGLMGGGFLYTNKDSISLGLVCG
CCCCHHHHHCCCHHHCCCCEEECCCCCCEEEEECCCCCCCCCCEEEEECCCCCCHHHHHH
LADIAHAQKSVPQMLEDFKQHPAIRPLISGGKLLEYSAHMVPEGGLAMVPQLVNDGVMIV
HHHHHHHHHHHHHHHHHHHHCCCCCHHHCCCCEEEEHHHCCCCCCHHHHHHHHCCCEEEE
GDAAGFCLNLGFTVRGMDLAIASAQAAATTVIAAKERADFSASSLAQYKRELEQSCVMRD
ECCCCEEEECCEEEECCCEEEHHHHHHHHHHEEEHHCCCCCHHHHHHHHHHHHHHHHHHH
MQHFRKIPALMENPRLFSQYPRMVADIMNEMFTIDGKPNQPVRKMIMGHAKKIGLINLLK
HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHEECCCCCCHHHHHHHHHHHHHHHHHHHHH
DGIKGATAL
HCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503 [H]