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The map label for this gene is ydcI [H]

Identifier: 209395969

GI number: 209395969

Start: 1926247

End: 1927170

Strand: Reverse

Name: ydcI [H]

Synonym: ECH74115_2027

Alternate gene names: 209395969

Gene position: 1927170-1926247 (Counterclockwise)

Preceding gene: 209399247

Following gene: 209399787

Centisome position: 34.59

GC content: 50.65

Gene sequence:

>924_bases
ATGGAAAAAAATAGTCTGTTTAGTCAGCGCATCCGTTTGCGCCACCTTCATACATTCGTAGCTGTCGCACAACAAGGAAC
TTTGGGGCGCGCGGCTGAAACCCTTAATTTGAGTCAACCTGCGCTCTCTAAGACATTAAATGAACTGGAGCAGCTGACGG
GCGCTCGCTTGTTTGAGCGTGGTCGTCAGGGGGCGCAACTTACCTTACCCGGCGAACAATTTTTAACGCATGCAGTCAGA
GTACTTGACGCCATCAACACTGCCGGACAGTCGCTTCATCGTAAAGAAGGTCCTAATAATGATGTCGTCAGGGTTGGTGC
ACTACCTACTGCGGCACTGGGGATATTACCTTCGGTTATAGGTCAGTTTCATCAGCAACAAAAAGAGACGACCTTGCAAG
TTGCGACAATGAGTAACCCTATGATTCTGGCGGGTTTGAAAACCGGGGAAATCGATATCGGCATTGGTCGGATGTCAGAT
CCTGAACTGATGACCGGGCTTAATTACGAACTGCTGTTTCTTGAATCGCTGAAGCTGGTTGTCCGCCCTAATCATCCGCT
ACTTCAGGAGAACGTAACGCTAAGCCGGGTGCTGGAATGGCCGGTCGTTGTATCACCAGAAGGCACTGCGCCACGCCAGC
ATTCAGATGCATTAGTACAGAGCCAGGGATGTAAAATTCCTTCGGGTTGTATCGAAACGCTGTCTGCTTCGCTATCTCGT
CAACTTACGGTTGAATACGACTACGTGTGGTTTGTCCCTTCTGGCGCGGTAAAAGACGACCTGCGTCATGCCACGCTGGT
GGCCCTGCCTGTTCCGGGACATGGTGCAGGCGAACCGATTGGAATACTGACCCGCGTAGATGCGACGTTCTCTTCTGGTT
GCCAGTTGATGATTAACGCTATTCGAAAATCAATGCCGTTCTGA

Upstream 100 bases:

>100_bases
TAACATAATTGCTTTAATTGTTAATAATATTTTGCAATCAAGTTATCATAATCAAACAACTTCACTTGTCAGCGACACCG
CTTCGTTTTTAACATCGCTT

Downstream 100 bases:

>100_bases
AAGGTGAAGGGATCTGTCGATCCCTCCTTTAACATTTTCACACCGGAGCGAAACTAACTAGTTCACCCGCTCCGCGAGGT
TCTGCCAACACAGATTGTTT

Product: transcriptional regulator, LysR family

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 307; Mature: 307

Protein sequence:

>307_residues
MEKNSLFSQRIRLRHLHTFVAVAQQGTLGRAAETLNLSQPALSKTLNELEQLTGARLFERGRQGAQLTLPGEQFLTHAVR
VLDAINTAGQSLHRKEGPNNDVVRVGALPTAALGILPSVIGQFHQQQKETTLQVATMSNPMILAGLKTGEIDIGIGRMSD
PELMTGLNYELLFLESLKLVVRPNHPLLQENVTLSRVLEWPVVVSPEGTAPRQHSDALVQSQGCKIPSGCIETLSASLSR
QLTVEYDYVWFVPSGAVKDDLRHATLVALPVPGHGAGEPIGILTRVDATFSSGCQLMINAIRKSMPF

Sequences:

>Translated_307_residues
MEKNSLFSQRIRLRHLHTFVAVAQQGTLGRAAETLNLSQPALSKTLNELEQLTGARLFERGRQGAQLTLPGEQFLTHAVR
VLDAINTAGQSLHRKEGPNNDVVRVGALPTAALGILPSVIGQFHQQQKETTLQVATMSNPMILAGLKTGEIDIGIGRMSD
PELMTGLNYELLFLESLKLVVRPNHPLLQENVTLSRVLEWPVVVSPEGTAPRQHSDALVQSQGCKIPSGCIETLSASLSR
QLTVEYDYVWFVPSGAVKDDLRHATLVALPVPGHGAGEPIGILTRVDATFSSGCQLMINAIRKSMPF
>Mature_307_residues
MEKNSLFSQRIRLRHLHTFVAVAQQGTLGRAAETLNLSQPALSKTLNELEQLTGARLFERGRQGAQLTLPGEQFLTHAVR
VLDAINTAGQSLHRKEGPNNDVVRVGALPTAALGILPSVIGQFHQQQKETTLQVATMSNPMILAGLKTGEIDIGIGRMSD
PELMTGLNYELLFLESLKLVVRPNHPLLQENVTLSRVLEWPVVVSPEGTAPRQHSDALVQSQGCKIPSGCIETLSASLSR
QLTVEYDYVWFVPSGAVKDDLRHATLVALPVPGHGAGEPIGILTRVDATFSSGCQLMINAIRKSMPF

Specific function: Unknown

COG id: COG0583

COG function: function code K; Transcriptional regulator

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI87081904, Length=307, Percent_Identity=99.3485342019544, Blast_Score=620, Evalue=1e-179,
Organism=Escherichia coli, GI1787601, Length=264, Percent_Identity=29.1666666666667, Blast_Score=117, Evalue=1e-27,
Organism=Escherichia coli, GI157672245, Length=227, Percent_Identity=32.5991189427313, Blast_Score=99, Evalue=3e-22,
Organism=Escherichia coli, GI1788887, Length=181, Percent_Identity=33.7016574585635, Blast_Score=96, Evalue=3e-21,
Organism=Escherichia coli, GI1787879, Length=195, Percent_Identity=32.8205128205128, Blast_Score=89, Evalue=3e-19,
Organism=Escherichia coli, GI1790262, Length=219, Percent_Identity=29.6803652968037, Blast_Score=75, Evalue=4e-15,
Organism=Escherichia coli, GI145693105, Length=203, Percent_Identity=23.1527093596059, Blast_Score=71, Evalue=1e-13,
Organism=Escherichia coli, GI1788748, Length=179, Percent_Identity=29.0502793296089, Blast_Score=70, Evalue=1e-13,
Organism=Escherichia coli, GI1789204, Length=186, Percent_Identity=29.0322580645161, Blast_Score=65, Evalue=8e-12,
Organism=Escherichia coli, GI2367136, Length=150, Percent_Identity=30.6666666666667, Blast_Score=64, Evalue=2e-11,
Organism=Escherichia coli, GI1790399, Length=301, Percent_Identity=22.5913621262458, Blast_Score=63, Evalue=3e-11,
Organism=Escherichia coli, GI1788296, Length=208, Percent_Identity=28.8461538461538, Blast_Score=63, Evalue=3e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 33358; Mature: 33358

Theoretical pI: Translated: 7.70; Mature: 7.70

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEKNSLFSQRIRLRHLHTFVAVAQQGTLGRAAETLNLSQPALSKTLNELEQLTGARLFER
CCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHC
GRQGAQLTLPGEQFLTHAVRVLDAINTAGQSLHRKEGPNNDVVRVGALPTAALGILPSVI
CCCCCEEEECHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCHHHHHHHHHHH
GQFHQQQKETTLQVATMSNPMILAGLKTGEIDIGIGRMSDPELMTGLNYELLFLESLKLV
HHHHHHHHHHEEEEEECCCCEEEEECCCCCEEEECCCCCCCHHHHCCCEEEEEEEEEEEE
VRPNHPLLQENVTLSRVLEWPVVVSPEGTAPRQHSDALVQSQGCKIPSGCIETLSASLSR
ECCCCCCHHCCCHHHHHHCCCEEECCCCCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHCC
QLTVEYDYVWFVPSGAVKDDLRHATLVALPVPGHGAGEPIGILTRVDATFSSGCQLMINA
EEEEEEEEEEEECCCCHHHHCCCEEEEEEECCCCCCCCCEEEEEEECCCHHCCHHHHHHH
IRKSMPF
HHHHCCC
>Mature Secondary Structure
MEKNSLFSQRIRLRHLHTFVAVAQQGTLGRAAETLNLSQPALSKTLNELEQLTGARLFER
CCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHC
GRQGAQLTLPGEQFLTHAVRVLDAINTAGQSLHRKEGPNNDVVRVGALPTAALGILPSVI
CCCCCEEEECHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCHHHHHHHHHHH
GQFHQQQKETTLQVATMSNPMILAGLKTGEIDIGIGRMSDPELMTGLNYELLFLESLKLV
HHHHHHHHHHEEEEEECCCCEEEEECCCCCEEEECCCCCCCHHHHCCCEEEEEEEEEEEE
VRPNHPLLQENVTLSRVLEWPVVVSPEGTAPRQHSDALVQSQGCKIPSGCIETLSASLSR
ECCCCCCHHCCCHHHHHHCCCEEECCCCCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHCC
QLTVEYDYVWFVPSGAVKDDLRHATLVALPVPGHGAGEPIGILTRVDATFSSGCQLMINA
EEEEEEEEEEEECCCCHHHHCCCEEEEEEECCCCCCCCCEEEEEEECCCHHCCHHHHHHH
IRKSMPF
HHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503 [H]