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The map label for this gene is rdgA [H]

Identifier: 209395751

GI number: 209395751

Start: 2975285

End: 2975899

Strand: Direct

Name: rdgA [H]

Synonym: ECH74115_3237

Alternate gene names: 209395751

Gene position: 2975285-2975899 (Clockwise)

Preceding gene: 209399029

Following gene: 209397577

Centisome position: 53.4

GC content: 46.83

Gene sequence:

>615_bases
TTGGTCGGGGTTAGCCAAGCTGCTATTCAGAAAATCGAAACAGGGAAAGCTAATCAAACAACTAAAATCGTGGAGATCGC
GAACGCTTTGGGTGTGCGCGCAGAATGGTTATCTTCTGGCGTTGGAAATATGTCAGACAGTACAGTGCAACCAATACAAC
CAACTGTCAGCCATTCCAAATACTTTAAGATTGACGTTCTTGATATAGAAGTGAGTGCCGGGCCGGGTGTCATCAACCGT
GAGTTTGTAGAAGTCCTACGCTCGGTTGAGTACTCGTTTGACGATGCTCGTCACATGTTCGATGGCAGGAAGGCAGAAAA
TATCCGCATCATTAACGTACGCGGTGACAGCATGTCAGGAACGATTGAACCTGGTGATCTGCTGTTCGTTGATATCACGG
TTAAATCTTTCGACGGTGATGGTATCTATGCGTTTCTGTACGACGACACAGCCCATGTAAAGCGCCTGCAAATGATGAAG
GATAAACTGCTGGTTATCTCTGATAACAAGAGCTACTCACCGTGGGACCCAATCGAGAAAGACGAGATGAACCGGGTGTT
TATCTTCGGGAAAGTTATTGGGAGCATGCCGCAGACGTATAGGAAGCATGGATAG

Upstream 100 bases:

>100_bases
AAAACCTTGGTTGTACATTTGAACTATGAAAACAACACTCTCAGAAAGACTTAAAGAAGCCAGATTAGCGCGAGGCCTTA
CACAAAAGGCGCTTGGGGAT

Downstream 100 bases:

>100_bases
TACCAATTAAAAATTATCAACCGGGCATTGTGCTCATTCAGTAAAACAACTTAATTATTCATTTTAGAATGGAGAACTTA
ATGGATACTTTAAAATATGA

Product: putative repressor protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 204; Mature: 204

Protein sequence:

>204_residues
MVGVSQAAIQKIETGKANQTTKIVEIANALGVRAEWLSSGVGNMSDSTVQPIQPTVSHSKYFKIDVLDIEVSAGPGVINR
EFVEVLRSVEYSFDDARHMFDGRKAENIRIINVRGDSMSGTIEPGDLLFVDITVKSFDGDGIYAFLYDDTAHVKRLQMMK
DKLLVISDNKSYSPWDPIEKDEMNRVFIFGKVIGSMPQTYRKHG

Sequences:

>Translated_204_residues
MVGVSQAAIQKIETGKANQTTKIVEIANALGVRAEWLSSGVGNMSDSTVQPIQPTVSHSKYFKIDVLDIEVSAGPGVINR
EFVEVLRSVEYSFDDARHMFDGRKAENIRIINVRGDSMSGTIEPGDLLFVDITVKSFDGDGIYAFLYDDTAHVKRLQMMK
DKLLVISDNKSYSPWDPIEKDEMNRVFIFGKVIGSMPQTYRKHG
>Mature_204_residues
MVGVSQAAIQKIETGKANQTTKIVEIANALGVRAEWLSSGVGNMSDSTVQPIQPTVSHSKYFKIDVLDIEVSAGPGVINR
EFVEVLRSVEYSFDDARHMFDGRKAENIRIINVRGDSMSGTIEPGDLLFVDITVKSFDGDGIYAFLYDDTAHVKRLQMMK
DKLLVISDNKSYSPWDPIEKDEMNRVFIFGKVIGSMPQTYRKHG

Specific function: Regulates pectin lyase production in response to DNA damage [H]

COG id: COG2932

COG function: function code K; Predicted transcriptional regulator

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH cro/C1-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001387
- InterPro:   IPR010982
- InterPro:   IPR019759
- InterPro:   IPR015927
- InterPro:   IPR011056 [H]

Pfam domain/function: PF01381 HTH_3; PF00717 Peptidase_S24 [H]

EC number: NA

Molecular weight: Translated: 22751; Mature: 22751

Theoretical pI: Translated: 5.70; Mature: 5.70

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.9 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.9 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVGVSQAAIQKIETGKANQTTKIVEIANALGVRAEWLSSGVGNMSDSTVQPIQPTVSHSK
CCCCCHHHHHHHHCCCCCCHHHHHHHHHHHCCHHHHHHCCCCCCCCCCCCCCCCCCCCCE
YFKIDVLDIEVSAGPGVINREFVEVLRSVEYSFDDARHMFDGRKAENIRIINVRGDSMSG
EEEEEEEEEEECCCCCCCCHHHHHHHHHHCCCCCHHHHHHCCCCCCCEEEEEEECCCCCC
TIEPGDLLFVDITVKSFDGDGIYAFLYDDTAHVKRLQMMKDKLLVISDNKSYSPWDPIEK
CCCCCCEEEEEEEEEEECCCEEEEEEECCHHHHHHHHHHHCCEEEEECCCCCCCCCCCCC
DEMNRVFIFGKVIGSMPQTYRKHG
CCCCEEEEEHHHHCCCHHHHHHCC
>Mature Secondary Structure
MVGVSQAAIQKIETGKANQTTKIVEIANALGVRAEWLSSGVGNMSDSTVQPIQPTVSHSK
CCCCCHHHHHHHHCCCCCCHHHHHHHHHHHCCHHHHHHCCCCCCCCCCCCCCCCCCCCCE
YFKIDVLDIEVSAGPGVINREFVEVLRSVEYSFDDARHMFDGRKAENIRIINVRGDSMSG
EEEEEEEEEEECCCCCCCCHHHHHHHHHHCCCCCHHHHHHCCCCCCCEEEEEEECCCCCC
TIEPGDLLFVDITVKSFDGDGIYAFLYDDTAHVKRLQMMKDKLLVISDNKSYSPWDPIEK
CCCCCCEEEEEEEEEEECCCEEEEEEECCHHHHHHHHHHHCCEEEEECCCCCCCCCCCCC
DEMNRVFIFGKVIGSMPQTYRKHG
CCCCEEEEEHHHHCCCHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7715460 [H]