| Definition | Aliivibrio salmonicida LFI1238 chromosome 1, complete genome. |
|---|---|
| Accession | NC_011312 |
| Length | 3,325,165 |
Click here to switch to the map view.
The map label for this gene is 209696351
Identifier: 209696351
GI number: 209696351
Start: 3200681
End: 3201700
Strand: Reverse
Name: 209696351
Synonym: VSAL_I2955
Alternate gene names: NA
Gene position: 3201700-3200681 (Counterclockwise)
Preceding gene: 209696353
Following gene: 209696350
Centisome position: 96.29
GC content: 43.04
Gene sequence:
>1020_bases ATGAAGCTTTCACTACTGACTTTCACCGCTCTTCTGTTTTTATCAGGGTGTAGCCAGCAATCAGCAATAGACACATCCAC AGATGATTTTGGTAACAGTCAATCCGCATCAGGGGCTCATACTTTTATACTGCGTGGTACTGTAGTCATTGGCCACGAAT CACAAAGTATTCAACCTTGTGGCAGTGACCAACAATATTGGATAAACCTCACTTCAGAGCAATGGAAAGCAGGAACCGAC ATTCAATCAACACCTTACCAATCAATGTATGGTGAATTAATCGGTCATTTTGAAGCACCACCAAAGGGCGGATTTGCGAA TGATTACCCTGCACGTTTTGTCGTTTCTCATATCAACAAATTAGTTGCAGGTGAAGGCGCACGCTGCCAACAACCCGCTC AACCAACAACCGCATCGGGTAATGAACCTTTTTGGAATGTTCAAGTAAATAAAGGGATATTTAGCGTATCGGAAATGGGT AAAAAGGCCCAACAGCAAGCTATTACGGATCAAGCATTATCCATCGAGCAACGCACCTATCAATCCGATGACATTTCTCT TGTGATGGACAGTGCTATCTGCAAAGACACCATGGTTGATACTGTTTATGGTTGGGCATCAGACGTCACGATAAATGATA AAAACTATCAAGGTTGTGCTTCAATCTCACCAAAAGATACCACGCTAAACTGGGTAAACACATACAAAGGAACCAGTACG GCAGGTAACTCAGGTTTAACCATTGGTCTAACCTTGCGTCCTGATCATTCCGCCGTCACTACGTATGATTATCAAAATGG CGAATCTCAGTTAGTTGAAACTGGCGTGTGGCAAGCCATTAATGAAAACCAAGTTCACGTATTAATGAGCCGTCACCAAC GACAATACATGATTGCAGAACGAACCTTTACCCGTAAAGGCAATACCATCAACGCAGAGAAAGAAACGGTGAATGGCGTA GTCTTTCCCATCCAATCAGGGCTAACCTTATTCTCACCAGTACAACCGTTGGATAAATAA
Upstream 100 bases:
>100_bases TATTATCAATAGCTCTGATAAAGGTGAATTCCAATCTATTTTAGGTGTCCTATGGCATACTGGTTTTTATTCAACTTATC ATCGATTTCTGGAGTTTATT
Downstream 100 bases:
>100_bases TGTCTTGTTCAATTTGTGGATTTACCTATAACTGTATTTGCTCTCATCAGCCAAATTTAATCTCGCACATTGAATTTGCG CTGCTGTACCATGAGAACGA
Product: lipoprotein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 339; Mature: 339
Protein sequence:
>339_residues MKLSLLTFTALLFLSGCSQQSAIDTSTDDFGNSQSASGAHTFILRGTVVIGHESQSIQPCGSDQQYWINLTSEQWKAGTD IQSTPYQSMYGELIGHFEAPPKGGFANDYPARFVVSHINKLVAGEGARCQQPAQPTTASGNEPFWNVQVNKGIFSVSEMG KKAQQQAITDQALSIEQRTYQSDDISLVMDSAICKDTMVDTVYGWASDVTINDKNYQGCASISPKDTTLNWVNTYKGTST AGNSGLTIGLTLRPDHSAVTTYDYQNGESQLVETGVWQAINENQVHVLMSRHQRQYMIAERTFTRKGNTINAEKETVNGV VFPIQSGLTLFSPVQPLDK
Sequences:
>Translated_339_residues MKLSLLTFTALLFLSGCSQQSAIDTSTDDFGNSQSASGAHTFILRGTVVIGHESQSIQPCGSDQQYWINLTSEQWKAGTD IQSTPYQSMYGELIGHFEAPPKGGFANDYPARFVVSHINKLVAGEGARCQQPAQPTTASGNEPFWNVQVNKGIFSVSEMG KKAQQQAITDQALSIEQRTYQSDDISLVMDSAICKDTMVDTVYGWASDVTINDKNYQGCASISPKDTTLNWVNTYKGTST AGNSGLTIGLTLRPDHSAVTTYDYQNGESQLVETGVWQAINENQVHVLMSRHQRQYMIAERTFTRKGNTINAEKETVNGV VFPIQSGLTLFSPVQPLDK >Mature_339_residues MKLSLLTFTALLFLSGCSQQSAIDTSTDDFGNSQSASGAHTFILRGTVVIGHESQSIQPCGSDQQYWINLTSEQWKAGTD IQSTPYQSMYGELIGHFEAPPKGGFANDYPARFVVSHINKLVAGEGARCQQPAQPTTASGNEPFWNVQVNKGIFSVSEMG KKAQQQAITDQALSIEQRTYQSDDISLVMDSAICKDTMVDTVYGWASDVTINDKNYQGCASISPKDTTLNWVNTYKGTST AGNSGLTIGLTLRPDHSAVTTYDYQNGESQLVETGVWQAINENQVHVLMSRHQRQYMIAERTFTRKGNTINAEKETVNGV VFPIQSGLTLFSPVQPLDK
Specific function: Unknown
COG id: COG3650
COG function: function code S; Predicted membrane protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 37119; Mature: 37119
Theoretical pI: Translated: 5.12; Mature: 5.12
Prosite motif: PS00013 PROKAR_LIPOPROTEIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.5 %Cys (Translated Protein) 2.1 %Met (Translated Protein) 3.5 %Cys+Met (Translated Protein) 1.5 %Cys (Mature Protein) 2.1 %Met (Mature Protein) 3.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKLSLLTFTALLFLSGCSQQSAIDTSTDDFGNSQSASGAHTFILRGTVVIGHESQSIQPC CEEHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEEEECCCCCCCCC GSDQQYWINLTSEQWKAGTDIQSTPYQSMYGELIGHFEAPPKGGFANDYPARFVVSHINK CCCCEEEEEECHHHCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHH LVAGEGARCQQPAQPTTASGNEPFWNVQVNKGIFSVSEMGKKAQQQAITDQALSIEQRTY HHCCCCCCCCCCCCCCCCCCCCCEEEEEECCCEEEHHHHHHHHHHHHHHHHHHHHHHHHC QSDDISLVMDSAICKDTMVDTVYGWASDVTINDKNYQGCASISPKDTTLNWVNTYKGTST CCCCCEEEEHHHHHHHHHHHHHHCCEECEEECCCCCCCCCCCCCCCCEEEEEEECCCCCC AGNSGLTIGLTLRPDHSAVTTYDYQNGESQLVETGVWQAINENQVHVLMSRHQRQYMIAE CCCCCEEEEEEECCCCCEEEEEECCCCHHHHHHHHHHHHCCCCCEEEEEHHHCHHEEHHH RTFTRKGNTINAEKETVNGVVFPIQSGLTLFSPVQPLDK HHCCCCCCEECCCHHHCCEEEEEECCCCEEECCCCCCCC >Mature Secondary Structure MKLSLLTFTALLFLSGCSQQSAIDTSTDDFGNSQSASGAHTFILRGTVVIGHESQSIQPC CEEHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEEEECCCCCCCCC GSDQQYWINLTSEQWKAGTDIQSTPYQSMYGELIGHFEAPPKGGFANDYPARFVVSHINK CCCCEEEEEECHHHCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHH LVAGEGARCQQPAQPTTASGNEPFWNVQVNKGIFSVSEMGKKAQQQAITDQALSIEQRTY HHCCCCCCCCCCCCCCCCCCCCCEEEEEECCCEEEHHHHHHHHHHHHHHHHHHHHHHHHC QSDDISLVMDSAICKDTMVDTVYGWASDVTINDKNYQGCASISPKDTTLNWVNTYKGTST CCCCCEEEEHHHHHHHHHHHHHHCCEECEEECCCCCCCCCCCCCCCCEEEEEEECCCCCC AGNSGLTIGLTLRPDHSAVTTYDYQNGESQLVETGVWQAINENQVHVLMSRHQRQYMIAE CCCCCEEEEEEECCCCCEEEEEECCCCHHHHHHHHHHHHCCCCCEEEEEHHHCHHEEHHH RTFTRKGNTINAEKETVNGVVFPIQSGLTLFSPVQPLDK HHCCCCCCEECCCHHHCCEEEEEECCCCEEECCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA