| Definition | Aliivibrio salmonicida LFI1238 chromosome 1, complete genome. |
|---|---|
| Accession | NC_011312 |
| Length | 3,325,165 |
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The map label for this gene is yhiN [H]
Identifier: 209696346
GI number: 209696346
Start: 3193951
End: 3195156
Strand: Direct
Name: yhiN [H]
Synonym: VSAL_I2949
Alternate gene names: 209696346
Gene position: 3193951-3195156 (Clockwise)
Preceding gene: 209696345
Following gene: 209696347
Centisome position: 96.05
GC content: 41.21
Gene sequence:
>1206_bases TTGAATTTGGGTGAGAGTGTCATGAAAAAAGTAGACGTAGTGGTTATCGGTGCAGGCGCTGCAGGATTAATGTGTGCAGC TGAAGCCGGCAAACGAGGCCGCAGTGTTTTAGTTGTCGATCACGCTAAAAAACCGGGACGTAAAATTTTAATCTCTGGTG GTGGTCGTTGTAATTTTACGAATTACGATGTGTCAGCAACTCACTTTGTTTGTAACAACGCTCACTTTGTGAAATCGGCA TTGTCTCAATACACTAACTGGGATTTCATCTCTTTAGTGTCTAAATACGGCATCGAATTTGAAGAGCGCGATCATGGCCA ATTATTCTGTGTCGATTCGGCAAAAGAAATTGTCGATATGCTGCTAAAAGAATGTGAACTGGCTAATGTGAATTATCGCT ACCGCTGCGAGATTCAGGATGTTAAAAAGAGTGAATCCGGTTTTTCTCTGATGCTTGATACTGATCGTATCGAATGTGAA TCTTTGGTGATCGCGACGGGTGGACTATCAATGCCGAAATTAGGTGCAACCCCGTTTGGTTATCAATTGGCTGAGCAGTT TGGTTTATCAATGGTTCCAACGACGGCAGGTCTTGTTCCGTTCACGTTGCATAAAGAAGATAAAGACGCGTTTTCTGAAC TGTCAGGCATTGCGATTCCAGTGGTTGTAGAATCAGAAAGTGGTGATAGCTTTAAAGAAAATCTCTTATTTACCCACCGT GGTTTATCTGGCCCCTCAATCCTACAAATTTCTTCATATTGGAACGCAGGTCAAAAAGTAATGATAGATTTGTTACCAAA TGACGATTTGTCCGAAGAATTAGATACTATGCGTATCGATCATCCCAATCAAAGCGTTAAAAATTCATTAGCTAAATTAT TGCCTAAAAGAGTGGTTGAAACCTTATTAAAGAATACTATTTTTAATGATCGTTCTCTTAAGCAAATCAATAACAAAGAA CAAGAACAGCTGTGTTCGTTGTTCCATAAATGGCAAGTTCTTCCTAATGGCACTGAAGGGTATCGTACCGCGGAAGTCAC GCTAGGAGGGGTTGATAGCAATGAATTGTCGTCTAAAACCATGGAATCGAAAAAAGTACCTGGTCTGTATTTTGTCGGGG AAGTAATGGATGTAAGTGGTTGGCTTGGCGGCTATAACTTTCAGTGGGCATGGTCGAGCGGTTATGTTGCAGGGATAAAC GTATAG
Upstream 100 bases:
>100_bases CTTCATGTTATCGAGTGCTTTGCTTTTCGTTACCGTCGCGGTGTTTTTCTTGGTAATTAGTTTGGGCATCTAGAGCTGAA AATAGTAAACTCCCTCCCAA
Downstream 100 bases:
>100_bases GATTACCTAATAATCATTAAGTCATTATTGGTTTATTCTAAAAATAGGGGCGCATAGGTGCCTCTGTTTTATATGTGACG AGCTAAATATATTAAAATAA
Product: FAD dependent oxidoreductase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 401; Mature: 401
Protein sequence:
>401_residues MNLGESVMKKVDVVVIGAGAAGLMCAAEAGKRGRSVLVVDHAKKPGRKILISGGGRCNFTNYDVSATHFVCNNAHFVKSA LSQYTNWDFISLVSKYGIEFEERDHGQLFCVDSAKEIVDMLLKECELANVNYRYRCEIQDVKKSESGFSLMLDTDRIECE SLVIATGGLSMPKLGATPFGYQLAEQFGLSMVPTTAGLVPFTLHKEDKDAFSELSGIAIPVVVESESGDSFKENLLFTHR GLSGPSILQISSYWNAGQKVMIDLLPNDDLSEELDTMRIDHPNQSVKNSLAKLLPKRVVETLLKNTIFNDRSLKQINNKE QEQLCSLFHKWQVLPNGTEGYRTAEVTLGGVDSNELSSKTMESKKVPGLYFVGEVMDVSGWLGGYNFQWAWSSGYVAGIN V
Sequences:
>Translated_401_residues MNLGESVMKKVDVVVIGAGAAGLMCAAEAGKRGRSVLVVDHAKKPGRKILISGGGRCNFTNYDVSATHFVCNNAHFVKSA LSQYTNWDFISLVSKYGIEFEERDHGQLFCVDSAKEIVDMLLKECELANVNYRYRCEIQDVKKSESGFSLMLDTDRIECE SLVIATGGLSMPKLGATPFGYQLAEQFGLSMVPTTAGLVPFTLHKEDKDAFSELSGIAIPVVVESESGDSFKENLLFTHR GLSGPSILQISSYWNAGQKVMIDLLPNDDLSEELDTMRIDHPNQSVKNSLAKLLPKRVVETLLKNTIFNDRSLKQINNKE QEQLCSLFHKWQVLPNGTEGYRTAEVTLGGVDSNELSSKTMESKKVPGLYFVGEVMDVSGWLGGYNFQWAWSSGYVAGIN V >Mature_401_residues MNLGESVMKKVDVVVIGAGAAGLMCAAEAGKRGRSVLVVDHAKKPGRKILISGGGRCNFTNYDVSATHFVCNNAHFVKSA LSQYTNWDFISLVSKYGIEFEERDHGQLFCVDSAKEIVDMLLKECELANVNYRYRCEIQDVKKSESGFSLMLDTDRIECE SLVIATGGLSMPKLGATPFGYQLAEQFGLSMVPTTAGLVPFTLHKEDKDAFSELSGIAIPVVVESESGDSFKENLLFTHR GLSGPSILQISSYWNAGQKVMIDLLPNDDLSEELDTMRIDHPNQSVKNSLAKLLPKRVVETLLKNTIFNDRSLKQINNKE QEQLCSLFHKWQVLPNGTEGYRTAEVTLGGVDSNELSSKTMESKKVPGLYFVGEVMDVSGWLGGYNFQWAWSSGYVAGIN V
Specific function: Unknown
COG id: COG2081
COG function: function code R; Predicted flavoproteins
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: To H.influenzae HI_0933 [H]
Homologues:
Organism=Escherichia coli, GI2367234, Length=388, Percent_Identity=61.5979381443299, Blast_Score=491, Evalue=1e-140,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR004792 - InterPro: IPR013027 - InterPro: IPR023166 [H]
Pfam domain/function: PF03486 HI0933_like [H]
EC number: NA
Molecular weight: Translated: 44180; Mature: 44180
Theoretical pI: Translated: 5.47; Mature: 5.47
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.0 %Cys (Translated Protein) 2.7 %Met (Translated Protein) 4.7 %Cys+Met (Translated Protein) 2.0 %Cys (Mature Protein) 2.7 %Met (Mature Protein) 4.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNLGESVMKKVDVVVIGAGAAGLMCAAEAGKRGRSVLVVDHAKKPGRKILISGGGRCNFT CCCHHHHHHHEEEEEEECCCHHHHEEHHCCCCCCEEEEEECCCCCCCEEEEECCCEEECC NYDVSATHFVCNNAHFVKSALSQYTNWDFISLVSKYGIEFEERDHGQLFCVDSAKEIVDM CCCCCEEEEEECCCHHHHHHHHHHCCCHHHHHHHHHCCCEEECCCCCEEEECCHHHHHHH LLKECELANVNYRYRCEIQDVKKSESGFSLMLDTDRIECESLVIATGGLSMPKLGATPFG HHHHHHCCCCCEEEEEEEHHCCCCCCCCEEEEECCCCCEEEEEEEECCCCCCCCCCCCCH YQLAEQFGLSMVPTTAGLVPFTLHKEDKDAFSELSGIAIPVVVESESGDSFKENLLFTHR HHHHHHCCCEECCCCCCCEEEEEECCCHHHHHHHCCCEEEEEEECCCCCCHHHCEEEEEC GLSGPSILQISSYWNAGQKVMIDLLPNDDLSEELDTMRIDHPNQSVKNSLAKLLPKRVVE CCCCCCEEEEECCCCCCCEEEEEECCCCCHHHHHHHEECCCCCHHHHHHHHHHHHHHHHH TLLKNTIFNDRSLKQINNKEQEQLCSLFHKWQVLPNGTEGYRTAEVTLGGVDSNELSSKT HHHHHHCCCCCHHHHHCCHHHHHHHHHHHHHEECCCCCCCEEEEEEEEECCCCHHHHHHH MESKKVPGLYFVGEVMDVSGWLGGYNFQWAWSSGYVAGINV HHHHCCCCEEEEHHHHCCCCCCCCCEEEEEECCCEEEEECC >Mature Secondary Structure MNLGESVMKKVDVVVIGAGAAGLMCAAEAGKRGRSVLVVDHAKKPGRKILISGGGRCNFT CCCHHHHHHHEEEEEEECCCHHHHEEHHCCCCCCEEEEEECCCCCCCEEEEECCCEEECC NYDVSATHFVCNNAHFVKSALSQYTNWDFISLVSKYGIEFEERDHGQLFCVDSAKEIVDM CCCCCEEEEEECCCHHHHHHHHHHCCCHHHHHHHHHCCCEEECCCCCEEEECCHHHHHHH LLKECELANVNYRYRCEIQDVKKSESGFSLMLDTDRIECESLVIATGGLSMPKLGATPFG HHHHHHCCCCCEEEEEEEHHCCCCCCCCEEEEECCCCCEEEEEEEECCCCCCCCCCCCCH YQLAEQFGLSMVPTTAGLVPFTLHKEDKDAFSELSGIAIPVVVESESGDSFKENLLFTHR HHHHHHCCCEECCCCCCCEEEEEECCCHHHHHHHCCCEEEEEEECCCCCCHHHCEEEEEC GLSGPSILQISSYWNAGQKVMIDLLPNDDLSEELDTMRIDHPNQSVKNSLAKLLPKRVVE CCCCCCEEEEECCCCCCCEEEEEECCCCCHHHHHHHEECCCCCHHHHHHHHHHHHHHHHH TLLKNTIFNDRSLKQINNKEQEQLCSLFHKWQVLPNGTEGYRTAEVTLGGVDSNELSSKT HHHHHHCCCCCHHHHHCCHHHHHHHHHHHHHEECCCCCCCEEEEEEEEECCCCHHHHHHH MESKKVPGLYFVGEVMDVSGWLGGYNFQWAWSSGYVAGINV HHHHCCCCEEEEHHHHCCCCCCCCCEEEEEECCCEEEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 8041620; 9278503 [H]