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The map label for this gene is rsd [H]

Identifier: 209696257

GI number: 209696257

Start: 3092825

End: 3093334

Strand: Direct

Name: rsd [H]

Synonym: VSAL_I2854

Alternate gene names: 209696257

Gene position: 3092825-3093334 (Clockwise)

Preceding gene: 209696256

Following gene: 209696264

Centisome position: 93.01

GC content: 36.86

Gene sequence:

>510_bases
ATGACTTGCAACTACAAGGATATCGTTATGCTAACTAAACTAAATCAATTTCAAGAAGAATGGGGTGGGAATAGCGAGGT
TATTGATCATTGGTTATCAACTCGTCAAGACTTGCTAGTTGAATACTGTAAATTGGCAGGCCTACCTCCTTTTGATTCAT
CAAACTCCTCTCTGCCGTCTTTCTCATCAATTCAATTGTTTACACAGCATTTAATTGATTATATTTCTGAAGGACATTTC
AAAATTTATAACATGGTAATGGCGAAGTGGGATTCAACTGGTTTTTCTCCAACAGAAGAGATGAGTCAGCTATATGCCAA
AATCACAAAAACAACCGATCCAATGTTGAATTTTACCGATAAATACTCACAAGAAAATGAAGACTTACTGCTCTCTGACT
TTGATAAAGATTTTTCAATCTTAGGTGAGACCATTGGCGAACGTTTTGAACTGGAAGATGGGCTAATTGAGCAAATTGCG
ACTAGTTTAAATCACCCACCAGGGGCTTAA

Upstream 100 bases:

>100_bases
CTGGCAATCTTAATCAATATAGTAATGAGTGTATACCTAACCCATTTCCGCTGAAACCGTATTTGGGTGTAACTTAGGTA
TAGCTATAAAACTTTGGTTT

Downstream 100 bases:

>100_bases
CAAAAAAGAGCGTTTATGTATTTTAAACGCTCTTTTTCCGTTATAAAACTTGATTCGTTTCTGAGGAATACTTGCGGAAT
ATTGGGTTTTCTTTGCCATT

Product: anti-RNA polymerase sigma 70 factor

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 169; Mature: 168

Protein sequence:

>169_residues
MTCNYKDIVMLTKLNQFQEEWGGNSEVIDHWLSTRQDLLVEYCKLAGLPPFDSSNSSLPSFSSIQLFTQHLIDYISEGHF
KIYNMVMAKWDSTGFSPTEEMSQLYAKITKTTDPMLNFTDKYSQENEDLLLSDFDKDFSILGETIGERFELEDGLIEQIA
TSLNHPPGA

Sequences:

>Translated_169_residues
MTCNYKDIVMLTKLNQFQEEWGGNSEVIDHWLSTRQDLLVEYCKLAGLPPFDSSNSSLPSFSSIQLFTQHLIDYISEGHF
KIYNMVMAKWDSTGFSPTEEMSQLYAKITKTTDPMLNFTDKYSQENEDLLLSDFDKDFSILGETIGERFELEDGLIEQIA
TSLNHPPGA
>Mature_168_residues
TCNYKDIVMLTKLNQFQEEWGGNSEVIDHWLSTRQDLLVEYCKLAGLPPFDSSNSSLPSFSSIQLFTQHLIDYISEGHFK
IYNMVMAKWDSTGFSPTEEMSQLYAKITKTTDPMLNFTDKYSQENEDLLLSDFDKDFSILGETIGERFELEDGLIEQIAT
SLNHPPGA

Specific function: Has binding activity to the major sigma subunit of RNA polymerase. May be involved in replacement of the RNA polymerase sigma subunit from sigma-70 to sigma-S during the transition from exponential growth to the stationary phase [H]

COG id: COG3160

COG function: function code K; Regulator of sigma D

Gene ontology:

Cell location: Cytoplasm (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the Rsd/AlgQ family [H]

Homologues:

Organism=Escherichia coli, GI1790428, Length=163, Percent_Identity=29.4478527607362, Blast_Score=79, Evalue=2e-16,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR007448 [H]

Pfam domain/function: PF04353 Rsd_AlgQ [H]

EC number: NA

Molecular weight: Translated: 19311; Mature: 19180

Theoretical pI: Translated: 4.12; Mature: 4.12

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
4.7 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTCNYKDIVMLTKLNQFQEEWGGNSEVIDHWLSTRQDLLVEYCKLAGLPPFDSSNSSLPS
CCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCC
FSSIQLFTQHLIDYISEGHFKIYNMVMAKWDSTGFSPTEEMSQLYAKITKTTDPMLNFTD
HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCHHCCHH
KYSQENEDLLLSDFDKDFSILGETIGERFELEDGLIEQIATSLNHPPGA
HHCCCCCCCHHHHCCHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCC
>Mature Secondary Structure 
TCNYKDIVMLTKLNQFQEEWGGNSEVIDHWLSTRQDLLVEYCKLAGLPPFDSSNSSLPS
CCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCC
FSSIQLFTQHLIDYISEGHFKIYNMVMAKWDSTGFSPTEEMSQLYAKITKTTDPMLNFTD
HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCHHCCHH
KYSQENEDLLLSDFDKDFSILGETIGERFELEDGLIEQIATSLNHPPGA
HHCCCCCCCHHHHCCHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA