| Definition | Aliivibrio salmonicida LFI1238 chromosome 1, complete genome. |
|---|---|
| Accession | NC_011312 |
| Length | 3,325,165 |
Click here to switch to the map view.
The map label for this gene is 209696249
Identifier: 209696249
GI number: 209696249
Start: 3084535
End: 3085239
Strand: Reverse
Name: 209696249
Synonym: VSAL_I2845
Alternate gene names: NA
Gene position: 3085239-3084535 (Counterclockwise)
Preceding gene: 209696250
Following gene: 209696245
Centisome position: 92.78
GC content: 38.44
Gene sequence:
>705_bases ATGAAGCGCATTCTATCCACCTTACTTCTCTCCGCATTTCTTTTTGGCTGTTCATCTAATCCATTAGACGAACAACGCAT AAAACCAACGGTCTTGACTGGTGGTCAAATCCAAGGTGACGCAACGAGTTACTATTGGTATACACGTCGTTTACAACAAC CTGTTATTGCTTCTGATTACGTCACAATGGGTGATTATGGTTGGTATAAAACAACATATCGTTGGGAAAAAAGCACACTG GTTGAAGCCGTTCGTGAAGGCGAGATGCTTGATGGTAGTGATGGACTCATTCCTTACATGATGCATGTTCGCTATAACAG CAATGGTGAAGCGGTATATCAGCGTTATCGTAAAGATGGAAAAATATTCCCGTTAATGCCAAATCAATTAACTCAGTTTC AAGATCAATCCAAATACTTAATTGCGAAAGTGGAAGAGTTAAATAAGAATGATAACTCGTTATTCCAAGGTGAGTGGGAT GGTGAAACATTTTACTCGTGTGATGGTAAGCAATACGATCAATTAGAGTTTAATCAAATATTGCCTAACTTTGTGGTGGC TCGACTTTCAGGGCTAGACAGTTTTATTTCGTTTTTAGGCACCACTGAAAATAAAGATAAAGCAGTATTAAAAATGTCCG AATTATTACTATTAACAGACGACAGTTCTACCTGTATAGAACGCCCTGAACTGATTCAAGAGTAA
Upstream 100 bases:
>100_bases TAAAGCGGCTAATGTTCCAGCATTTGTTGCCGGTAAAGCACTGAAAGAATCAGTAAACTAAGATATACTTTGCCGAGTTA TTCCTTAACTCGGCATTTTT
Downstream 100 bases:
>100_bases TCTGTTATTAGAAAAAAAGGCGCTATCACAGCTAATGCCGTTCACTTAAGGGTGAATGGCATTCTTGTTTCTGGCATATC GTTGAGGTCTTGGTTTTACC
Product: lipoprotein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 234; Mature: 234
Protein sequence:
>234_residues MKRILSTLLLSAFLFGCSSNPLDEQRIKPTVLTGGQIQGDATSYYWYTRRLQQPVIASDYVTMGDYGWYKTTYRWEKSTL VEAVREGEMLDGSDGLIPYMMHVRYNSNGEAVYQRYRKDGKIFPLMPNQLTQFQDQSKYLIAKVEELNKNDNSLFQGEWD GETFYSCDGKQYDQLEFNQILPNFVVARLSGLDSFISFLGTTENKDKAVLKMSELLLLTDDSSTCIERPELIQE
Sequences:
>Translated_234_residues MKRILSTLLLSAFLFGCSSNPLDEQRIKPTVLTGGQIQGDATSYYWYTRRLQQPVIASDYVTMGDYGWYKTTYRWEKSTL VEAVREGEMLDGSDGLIPYMMHVRYNSNGEAVYQRYRKDGKIFPLMPNQLTQFQDQSKYLIAKVEELNKNDNSLFQGEWD GETFYSCDGKQYDQLEFNQILPNFVVARLSGLDSFISFLGTTENKDKAVLKMSELLLLTDDSSTCIERPELIQE >Mature_234_residues MKRILSTLLLSAFLFGCSSNPLDEQRIKPTVLTGGQIQGDATSYYWYTRRLQQPVIASDYVTMGDYGWYKTTYRWEKSTL VEAVREGEMLDGSDGLIPYMMHVRYNSNGEAVYQRYRKDGKIFPLMPNQLTQFQDQSKYLIAKVEELNKNDNSLFQGEWD GETFYSCDGKQYDQLEFNQILPNFVVARLSGLDSFISFLGTTENKDKAVLKMSELLLLTDDSSTCIERPELIQE
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 26972; Mature: 26972
Theoretical pI: Translated: 4.57; Mature: 4.57
Prosite motif: PS00013 PROKAR_LIPOPROTEIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.3 %Cys (Translated Protein) 3.0 %Met (Translated Protein) 4.3 %Cys+Met (Translated Protein) 1.3 %Cys (Mature Protein) 3.0 %Met (Mature Protein) 4.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKRILSTLLLSAFLFGCSSNPLDEQRIKPTVLTGGQIQGDATSYYWYTRRLQQPVIASDY CHHHHHHHHHHHHHHCCCCCCCCHHHCCCEEEECCEECCCCCHHHHHHHHHCCCCCCCCC VTMGDYGWYKTTYRWEKSTLVEAVREGEMLDGSDGLIPYMMHVRYNSNGEAVYQRYRKDG EEECCCCCCCCEEEECHHHHHHHHHCCCCCCCCCCCEEEEEEEEECCCCHHHHHHHHHCC KIFPLMPNQLTQFQDQSKYLIAKVEELNKNDNSLFQGEWDGETFYSCDGKQYDQLEFNQI CEEEECCHHHHHHHCCCHHHHHHHHHHCCCCCCEEECCCCCCEEEECCCCCCCCHHHHHH LPNFVVARLSGLDSFISFLGTTENKDKAVLKMSELLLLTDDSSTCIERPELIQE HHHHHHHHHHHHHHHHHHHCCCCCCCHHHHEEEEEEEEECCCHHHHCCCHHHCC >Mature Secondary Structure MKRILSTLLLSAFLFGCSSNPLDEQRIKPTVLTGGQIQGDATSYYWYTRRLQQPVIASDY CHHHHHHHHHHHHHHCCCCCCCCHHHCCCEEEECCEECCCCCHHHHHHHHHCCCCCCCCC VTMGDYGWYKTTYRWEKSTLVEAVREGEMLDGSDGLIPYMMHVRYNSNGEAVYQRYRKDG EEECCCCCCCCEEEECHHHHHHHHHCCCCCCCCCCCEEEEEEEEECCCCHHHHHHHHHCC KIFPLMPNQLTQFQDQSKYLIAKVEELNKNDNSLFQGEWDGETFYSCDGKQYDQLEFNQI CEEEECCHHHHHHHCCCHHHHHHHHHHCCCCCCEEECCCCCCEEEECCCCCCCCHHHHHH LPNFVVARLSGLDSFISFLGTTENKDKAVLKMSELLLLTDDSSTCIERPELIQE HHHHHHHHHHHHHHHHHHHCCCCCCCHHHHEEEEEEEEECCCHHHHCCCHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA