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The map label for this gene is zntR [H]

Identifier: 209696245

GI number: 209696245

Start: 3079278

End: 3079697

Strand: Reverse

Name: zntR [H]

Synonym: VSAL_I2841

Alternate gene names: 209696245

Gene position: 3079697-3079278 (Counterclockwise)

Preceding gene: 209696249

Following gene: 209696244

Centisome position: 92.62

GC content: 35.95

Gene sequence:

>420_bases
ATGTATTTAATTGGTGAATTGGCAAAACACTGTAATGTAACCAGTGATACATTACGTTTTTATGAAAAGAATGGATTACT
CATTCCGTCAGGAAGAAGCAATAGTGGCTATCGTCTTTACAATGAAGAAAATCTAGCACAAATCCGTTTTATTTTAAAAG
CAAAGCAATTAGGTCTAACTCTTGATGAGATTAAAGAGTTGCTTGCGATTCGCTTGGAGGCAACCAAGCATAGCTGTGCA
GAAGTTAAATCGATCACTCAAACCAAGTTAACGATTATAGATGAAAAAATTGCACAGCTAACCGACATTCGTATTGCATT
GAAAAGTATTAATGATGCGTGTTGCGGTCATATTGATGATGATGCTTCGCATTGTTCAATACTTTCGGCATTGGCTGATT
TAGAAGAGAAGAAAGCGTAA

Upstream 100 bases:

>100_bases
AAAAGCTTCCGCAATCGATTGTATTCTCAAAAAAAGATGCCATTTTTATTAAAAAAGAATGAAAATGGGAGCAGAAAAAG
AGGGATTAGAGTTAATGAAA

Downstream 100 bases:

>100_bases
TTTATTGTGACTGTTTATTAAAGATTTTGATAAAATGGTCGATAAGTAATGTATAGAAGTTTGAGCGAAAATTTAGGTGA
GAGCCCATTAATGGAAAAAC

Product: transcriptional regulator

Products: NA

Alternate protein names: Zn(II)-responsive regulator of zntA [H]

Number of amino acids: Translated: 139; Mature: 139

Protein sequence:

>139_residues
MYLIGELAKHCNVTSDTLRFYEKNGLLIPSGRSNSGYRLYNEENLAQIRFILKAKQLGLTLDEIKELLAIRLEATKHSCA
EVKSITQTKLTIIDEKIAQLTDIRIALKSINDACCGHIDDDASHCSILSALADLEEKKA

Sequences:

>Translated_139_residues
MYLIGELAKHCNVTSDTLRFYEKNGLLIPSGRSNSGYRLYNEENLAQIRFILKAKQLGLTLDEIKELLAIRLEATKHSCA
EVKSITQTKLTIIDEKIAQLTDIRIALKSINDACCGHIDDDASHCSILSALADLEEKKA
>Mature_139_residues
MYLIGELAKHCNVTSDTLRFYEKNGLLIPSGRSNSGYRLYNEENLAQIRFILKAKQLGLTLDEIKELLAIRLEATKHSCA
EVKSITQTKLTIIDEKIAQLTDIRIALKSINDACCGHIDDDASHCSILSALADLEEKKA

Specific function: Zinc-responsive transcriptional regulator of zntA [H]

COG id: COG0789

COG function: function code K; Predicted transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH merR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1789687, Length=131, Percent_Identity=45.0381679389313, Blast_Score=126, Evalue=7e-31,
Organism=Escherichia coli, GI1786695, Length=129, Percent_Identity=35.6589147286822, Blast_Score=85, Evalue=2e-18,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009061
- InterPro:   IPR000551
- InterPro:   IPR015358
- InterPro:   IPR011788 [H]

Pfam domain/function: PF00376 MerR; PF09278 MerR-DNA-bind [H]

EC number: NA

Molecular weight: Translated: 15491; Mature: 15491

Theoretical pI: Translated: 6.50; Mature: 6.50

Prosite motif: PS00552 HTH_MERR_1 ; PS50937 HTH_MERR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.6 %Cys     (Translated Protein)
0.7 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
3.6 %Cys     (Mature Protein)
0.7 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MYLIGELAKHCNVTSDTLRFYEKNGLLIPSGRSNSGYRLYNEENLAQIRFILKAKQLGLT
CCHHHHHHHHCCCCHHHHHHHHCCCEEEECCCCCCCEEEECCCCHHHHHHHHHHHHHCCC
LDEIKELLAIRLEATKHSCAEVKSITQTKLTIIDEKIAQLTDIRIALKSINDACCGHIDD
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
DASHCSILSALADLEEKKA
CHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MYLIGELAKHCNVTSDTLRFYEKNGLLIPSGRSNSGYRLYNEENLAQIRFILKAKQLGLT
CCHHHHHHHHCCCCHHHHHHHHCCCEEEECCCCCCCEEEECCCCHHHHHHHHHHHHHCCC
LDEIKELLAIRLEATKHSCAEVKSITQTKLTIIDEKIAQLTDIRIALKSINDACCGHIDD
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
DASHCSILSALADLEEKKA
CHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]