| Definition | Aliivibrio salmonicida LFI1238 chromosome 1, complete genome. |
|---|---|
| Accession | NC_011312 |
| Length | 3,325,165 |
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The map label for this gene is fieF [H]
Identifier: 209696201
GI number: 209696201
Start: 3027433
End: 3028338
Strand: Reverse
Name: fieF [H]
Synonym: VSAL_I2795
Alternate gene names: 209696201
Gene position: 3028338-3027433 (Counterclockwise)
Preceding gene: 209696202
Following gene: 209696200
Centisome position: 91.07
GC content: 41.94
Gene sequence:
>906_bases ATGACTAAAAAATACGCCTCCTTAGTAACCATGGCCGCTTGGCTTGCAACGATTGTTGCAACCATCTTAATGTTAGTAAA GTTAGGAACATGGTGGGTTACCGGCTCGGTAAGTTTATTGGCGTCTTTGGTTGATTCATTACTTGATATGGCAGCATCTA TCACCAATTTATTGGTTGTGCGTTACGCACTTCAGCCACCAGATGAAGAACACAGCTTTGGGCACGGTAAAGCGGAATCA CTTGCGGCATTAGCACAAGCGATGTTTATTTCTGGCTCGGCGTGTTTTTTATTGTTAAATGGCGTAGAGCGCTTCTTCCG CCCTCAAGATGTAATAAACCCTGAATTAGGTGTTTATGTGAGTGGTTTTGCCATCATATTGACCTTTGGGCTTGTTATGG TTCAGCAATGGGTCGTTAAGCAAACAGGAAGCCAAGCGATTGCTGCGGATTCGTTGCATTATAAAACCGATCTTTTTATG AACGCGGCCATTATGTTGGCGCTTGCGTTAAGCTGGTATGGTTGGCATGAAGCAGATGCTATTTTTGCTTTGATTATCGG CATTTATATATTGATCAGTGCGTTTAGAATGGCGTATGAAGCGATTCAGTCATTGCTTGATAGACAATTGCCGATTGAAG AGTTAGAGCAGATAAGAGAAGCGTGTTGTCGTGTTGATGGGGTAAAAGGTATTCATGATTTGCGTACGCGTTTAGCCGGA CCAACTCGATTTATTCAATTGCATTTAGAGTTGCCAGATCAAATGCCGTTAGTCGAAGCGCATATTATTGCAGATAAAGT GGAAGACGAACTTTTAACAGTATTTCCACATTCTGACATTATAATTCATCAAGACCCACTTTCAGTTGTGCTAGACTCAG GAAAAGATCAAACACAGATCCAGTAA
Upstream 100 bases:
>100_bases TTATTGCTTTCATTTTGTTAGGTATTTATTAACAAATGGAATAACGGTCAGCGAATTAAATCTTTATACTAGAGGATGAT TTGTAAGTAATGGAAGAAAC
Downstream 100 bases:
>100_bases GAATTAGTAGTATTATTAGCAATTATTGTTTTTTCGTAACAGAAAAATGAAATAGTCGTGATTGATTCTGATGTGAATCA ACGAACTTTTTCAGTAAAAT
Product: ferrous iron efflux protein F
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 301; Mature: 300
Protein sequence:
>301_residues MTKKYASLVTMAAWLATIVATILMLVKLGTWWVTGSVSLLASLVDSLLDMAASITNLLVVRYALQPPDEEHSFGHGKAES LAALAQAMFISGSACFLLLNGVERFFRPQDVINPELGVYVSGFAIILTFGLVMVQQWVVKQTGSQAIAADSLHYKTDLFM NAAIMLALALSWYGWHEADAIFALIIGIYILISAFRMAYEAIQSLLDRQLPIEELEQIREACCRVDGVKGIHDLRTRLAG PTRFIQLHLELPDQMPLVEAHIIADKVEDELLTVFPHSDIIIHQDPLSVVLDSGKDQTQIQ
Sequences:
>Translated_301_residues MTKKYASLVTMAAWLATIVATILMLVKLGTWWVTGSVSLLASLVDSLLDMAASITNLLVVRYALQPPDEEHSFGHGKAES LAALAQAMFISGSACFLLLNGVERFFRPQDVINPELGVYVSGFAIILTFGLVMVQQWVVKQTGSQAIAADSLHYKTDLFM NAAIMLALALSWYGWHEADAIFALIIGIYILISAFRMAYEAIQSLLDRQLPIEELEQIREACCRVDGVKGIHDLRTRLAG PTRFIQLHLELPDQMPLVEAHIIADKVEDELLTVFPHSDIIIHQDPLSVVLDSGKDQTQIQ >Mature_300_residues TKKYASLVTMAAWLATIVATILMLVKLGTWWVTGSVSLLASLVDSLLDMAASITNLLVVRYALQPPDEEHSFGHGKAESL AALAQAMFISGSACFLLLNGVERFFRPQDVINPELGVYVSGFAIILTFGLVMVQQWVVKQTGSQAIAADSLHYKTDLFMN AAIMLALALSWYGWHEADAIFALIIGIYILISAFRMAYEAIQSLLDRQLPIEELEQIREACCRVDGVKGIHDLRTRLAGP TRFIQLHLELPDQMPLVEAHIIADKVEDELLTVFPHSDIIIHQDPLSVVLDSGKDQTQIQ
Specific function: Cation-efflux transporter that may have a role in detoxification [H]
COG id: COG0053
COG function: function code P; Predicted Co/Zn/Cd cation transporters
Gene ontology:
Cell location: Cell inner membrane; Multi-pass membrane protein [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the cation diffusion facilitator (CDF) transporter (TC 2.A.4) family. FieF subfamily [H]
Homologues:
Organism=Escherichia coli, GI1790349, Length=295, Percent_Identity=61.3559322033898, Blast_Score=362, Evalue=1e-101, Organism=Escherichia coli, GI1786966, Length=242, Percent_Identity=28.099173553719, Blast_Score=63, Evalue=2e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002524 [H]
Pfam domain/function: PF01545 Cation_efflux [H]
EC number: NA
Molecular weight: Translated: 33289; Mature: 33158
Theoretical pI: Translated: 4.83; Mature: 4.83
Prosite motif: PS00307 LECTIN_LEGUME_BETA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.0 %Cys (Translated Protein) 3.3 %Met (Translated Protein) 4.3 %Cys+Met (Translated Protein) 1.0 %Cys (Mature Protein) 3.0 %Met (Mature Protein) 4.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTKKYASLVTMAAWLATIVATILMLVKLGTWWVTGSVSLLASLVDSLLDMAASITNLLVV CCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH RYALQPPDEEHSFGHGKAESLAALAQAMFISGSACFLLLNGVERFFRPQDVINPELGVYV HHHCCCCCCCCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCHHCCCCCCCHHH SGFAIILTFGLVMVQQWVVKQTGSQAIAADSLHYKTDLFMNAAIMLALALSWYGWHEADA HHHHHHHHHHHHHHHHHHHHHCCCCHHHHCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHH IFALIIGIYILISAFRMAYEAIQSLLDRQLPIEELEQIREACCRVDGVKGIHDLRTRLAG HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHCC PTRFIQLHLELPDQMPLVEAHIIADKVEDELLTVFPHSDIIIHQDPLSVVLDSGKDQTQI CEEEEEEEEECCCCCCHHHHHHHHHHHHHHHEEEECCCCEEEECCHHHHHHCCCCCCCCC Q C >Mature Secondary Structure TKKYASLVTMAAWLATIVATILMLVKLGTWWVTGSVSLLASLVDSLLDMAASITNLLVV CHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH RYALQPPDEEHSFGHGKAESLAALAQAMFISGSACFLLLNGVERFFRPQDVINPELGVYV HHHCCCCCCCCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCHHCCCCCCCHHH SGFAIILTFGLVMVQQWVVKQTGSQAIAADSLHYKTDLFMNAAIMLALALSWYGWHEADA HHHHHHHHHHHHHHHHHHHHHCCCCHHHHCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHH IFALIIGIYILISAFRMAYEAIQSLLDRQLPIEELEQIREACCRVDGVKGIHDLRTRLAG HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHCC PTRFIQLHLELPDQMPLVEAHIIADKVEDELLTVFPHSDIIIHQDPLSVVLDSGKDQTQI CEEEEEEEEECCCCCCHHHHHHHHHHHHHHHEEEECCCCEEEECCHHHHHHCCCCCCCCC Q C
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: NA