Click here to switch to the map view.

The map label for this gene is priB [H]

Identifier: 209696171

GI number: 209696171

Start: 2994834

End: 2995136

Strand: Reverse

Name: priB [H]

Synonym: VSAL_I2765

Alternate gene names: 209696171

Gene position: 2995136-2994834 (Counterclockwise)

Preceding gene: 209696172

Following gene: 209696170

Centisome position: 90.07

GC content: 44.22

Gene sequence:

>303_bases
ATGACCAATCGATTGGAGTTAAGCGGTCTTATCGCAAAGGCTCCGGTTCGAAGTCTTAGTCCTGCGGGCATACCTCATTG
TCATTTTGTCATTGAGCATCGTTCGGTTAAACAGGAAGCTGGCTTATCACGTGAAGTCTATTGCAGAATGAACGTGGTAG
TTAGTGGACAAGGGTCTCAAGCTTTAACTGCAAACTTGGCTCAGGGTAGTAACGTTATGGTAGGTGGTTTTATCACGTAC
CAGACAGGCCGAAATGGTGTGTCTAGAGTAGTGTTACATGCTGAGCATATTAAATTCATTTAG

Upstream 100 bases:

>100_bases
CTGAGCCATCAGTAATGATGAAAGCTAAAGAAGAGCGTACTGCTAAGCGTGAAGACGCTGCACCACGCGCTGAAGAAGCT
GCTGCTGAGTAATTGATTTG

Downstream 100 bases:

>100_bases
ATCTGGAGATAGCCCATGGCTCGTTTCTTCCGTCGTCGTAAATTCTGCCGTTTTACAGCAGAAGGCGTACAAGAGATTGA
CTACAAAGACGTAGCAACTC

Product: primosomal replication protein N

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 100; Mature: 99

Protein sequence:

>100_residues
MTNRLELSGLIAKAPVRSLSPAGIPHCHFVIEHRSVKQEAGLSREVYCRMNVVVSGQGSQALTANLAQGSNVMVGGFITY
QTGRNGVSRVVLHAEHIKFI

Sequences:

>Translated_100_residues
MTNRLELSGLIAKAPVRSLSPAGIPHCHFVIEHRSVKQEAGLSREVYCRMNVVVSGQGSQALTANLAQGSNVMVGGFITY
QTGRNGVSRVVLHAEHIKFI
>Mature_99_residues
TNRLELSGLIAKAPVRSLSPAGIPHCHFVIEHRSVKQEAGLSREVYCRMNVVVSGQGSQALTANLAQGSNVMVGGFITYQ
TGRNGVSRVVLHAEHIKFI

Specific function: Binds single-stranded DNA at the primosome assembly site (PAS) [H]

COG id: COG2965

COG function: function code L; Primosomal replication protein N

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 SSB domain [H]

Homologues:

Organism=Escherichia coli, GI1790645, Length=100, Percent_Identity=54, Blast_Score=122, Evalue=3e-30,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012340
- InterPro:   IPR016027
- InterPro:   IPR000424 [H]

Pfam domain/function: PF00436 SSB [H]

EC number: NA

Molecular weight: Translated: 10799; Mature: 10667

Theoretical pI: Translated: 10.33; Mature: 10.33

Prosite motif: PS50935 SSB

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.0 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
5.0 %Cys+Met (Translated Protein)
2.0 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTNRLELSGLIAKAPVRSLSPAGIPHCHFVIEHRSVKQEAGLSREVYCRMNVVVSGQGSQ
CCCEECCCCEEECCCCCCCCCCCCCEEEEEEECCCCHHHCCCCEEEEEEEEEEEECCCCC
ALTANLAQGSNVMVGGFITYQTGRNGVSRVVLHAEHIKFI
EEEEECCCCCCEEEEEEEEEECCCCCCEEEEEEEEEEECC
>Mature Secondary Structure 
TNRLELSGLIAKAPVRSLSPAGIPHCHFVIEHRSVKQEAGLSREVYCRMNVVVSGQGSQ
CCEECCCCEEECCCCCCCCCCCCCEEEEEEECCCCHHHCCCCEEEEEEEEEEEECCCCC
ALTANLAQGSNVMVGGFITYQTGRNGVSRVVLHAEHIKFI
EEEEECCCCCCEEEEEEEEEECCCCCCEEEEEEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA