| Definition | Aliivibrio salmonicida LFI1238 chromosome 1, complete genome. |
|---|---|
| Accession | NC_011312 |
| Length | 3,325,165 |
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The map label for this gene is 209696095
Identifier: 209696095
GI number: 209696095
Start: 2909078
End: 2909779
Strand: Reverse
Name: 209696095
Synonym: VSAL_I2687
Alternate gene names: NA
Gene position: 2909779-2909078 (Counterclockwise)
Preceding gene: 209696096
Following gene: 209696094
Centisome position: 87.51
GC content: 38.89
Gene sequence:
>702_bases ATGAGTACTTTCTTTTCTCATCCTTCAAAGTTTTTGATAGGTTCATTGGTGATATTACCTCCCTTTGCTTTATCCTTGGT TATCGCGTTGCCTTATTATGAAGCAAGTAAGCAAGAAATTGTTCCCTATCACGCCAATTATGTTGAGTTAGCATTCCCTA CATGGGAAACACAAAAGATCCCTATGCGCCGTCATTTGTTAGCGCTTAATTCTTCAAATAATGCAAAGAAAGAGGTAGAG ACGCCTCTATCTGATAAGACTGGATTCGGTACAGTCAAGCGTGTTCCCGCTCAAGCTAATTCAAGCATTACGTCAGCGAA ACAAGAAAAAGATTTTAATATTAATAATTTAGATTTATCTGGATTGTCACCTGAGCTTGCAGCGCGGTTTGAATCGGCTA TGAATGATCCGGCAGACGTTAATCAAGAGAAAGAATTTGTTTGGGATAATGATGAATCGACCATTGAACTTGTTAAAAAT GGGGCTGAATTTATGGGGCGATTACCCGCGTTGAATTTTCAGACGCACAATTACACATCTAAGCTCAGTCAGCGGTGGGT AAAAGTGAATGGAAAAGAAGTCAGTGCAGGGGAGAAAATCACACCTAGTGTGTCATTACTTGAGATTAACCCAAGAAATG TAATCATTGAGTTTGAAAATAAAAAAATTGAAGTGCCTGCACTTTATGAGTGGAAAGGATGA
Upstream 100 bases:
>100_bases TTTCGGTTTGAAGACAGATGGAGTGGTGGGGTCAAGTACGTTAATGTGGTTAGACAGTGTGATAAATACCAATGTCCCTA TGCTTCAAGGAGACAAATAA
Downstream 100 bases:
>100_bases TGGATGTTCTTTCTGTATAAATAAGTGGATTATATAGATACAAAAAAGCTCAGAATAATTCTGAGCTTTTTTGTATTAGT TGAACCTTAATAAATGTAAG
Product: hypothetical protein
Products: NA
Alternate protein names: General Secretion Pathway Protein A; Type II Secretory Pathway Component ExeA
Number of amino acids: Translated: 233; Mature: 232
Protein sequence:
>233_residues MSTFFSHPSKFLIGSLVILPPFALSLVIALPYYEASKQEIVPYHANYVELAFPTWETQKIPMRRHLLALNSSNNAKKEVE TPLSDKTGFGTVKRVPAQANSSITSAKQEKDFNINNLDLSGLSPELAARFESAMNDPADVNQEKEFVWDNDESTIELVKN GAEFMGRLPALNFQTHNYTSKLSQRWVKVNGKEVSAGEKITPSVSLLEINPRNVIIEFENKKIEVPALYEWKG
Sequences:
>Translated_233_residues MSTFFSHPSKFLIGSLVILPPFALSLVIALPYYEASKQEIVPYHANYVELAFPTWETQKIPMRRHLLALNSSNNAKKEVE TPLSDKTGFGTVKRVPAQANSSITSAKQEKDFNINNLDLSGLSPELAARFESAMNDPADVNQEKEFVWDNDESTIELVKN GAEFMGRLPALNFQTHNYTSKLSQRWVKVNGKEVSAGEKITPSVSLLEINPRNVIIEFENKKIEVPALYEWKG >Mature_232_residues STFFSHPSKFLIGSLVILPPFALSLVIALPYYEASKQEIVPYHANYVELAFPTWETQKIPMRRHLLALNSSNNAKKEVET PLSDKTGFGTVKRVPAQANSSITSAKQEKDFNINNLDLSGLSPELAARFESAMNDPADVNQEKEFVWDNDESTIELVKNG AEFMGRLPALNFQTHNYTSKLSQRWVKVNGKEVSAGEKITPSVSLLEINPRNVIIEFENKKIEVPALYEWKG
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 26187; Mature: 26056
Theoretical pI: Translated: 6.14; Mature: 6.14
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 1.7 %Met (Translated Protein) 1.7 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 1.3 %Met (Mature Protein) 1.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSTFFSHPSKFLIGSLVILPPFALSLVIALPYYEASKQEIVPYHANYVELAFPTWETQKI CCCCCCCCHHHHHHHHHHHCHHHHHHHHHCCCCCCCCCCCCEECCCEEEEEECCCCCCCC PMRRHLLALNSSNNAKKEVETPLSDKTGFGTVKRVPAQANSSITSAKQEKDFNINNLDLS CHHHEEEEECCCCCCHHHHCCCCCCCCCCCHHEECCCCCCCCHHHHHHHCCCCCCCEECC GLSPELAARFESAMNDPADVNQEKEFVWDNDESTIELVKNGAEFMGRLPALNFQTHNYTS CCCHHHHHHHHHHCCCCCCCCCCCCEEECCCCHHHHHHHCCHHHHHCCCCCEEECCCHHH KLSQRWVKVNGKEVSAGEKITPSVSLLEINPRNVIIEFENKKIEVPALYEWKG HHHHHHEEECCEEECCCCCCCCCEEEEEECCCEEEEEECCCEEECCEEEECCC >Mature Secondary Structure STFFSHPSKFLIGSLVILPPFALSLVIALPYYEASKQEIVPYHANYVELAFPTWETQKI CCCCCCCHHHHHHHHHHHCHHHHHHHHHCCCCCCCCCCCCEECCCEEEEEECCCCCCCC PMRRHLLALNSSNNAKKEVETPLSDKTGFGTVKRVPAQANSSITSAKQEKDFNINNLDLS CHHHEEEEECCCCCCHHHHCCCCCCCCCCCHHEECCCCCCCCHHHHHHHCCCCCCCEECC GLSPELAARFESAMNDPADVNQEKEFVWDNDESTIELVKNGAEFMGRLPALNFQTHNYTS CCCHHHHHHHHHHCCCCCCCCCCCCEEECCCCHHHHHHHCCHHHHHCCCCCEEECCCHHH KLSQRWVKVNGKEVSAGEKITPSVSLLEINPRNVIIEFENKKIEVPALYEWKG HHHHHHEEECCEEECCCCCCCCCEEEEEECCCEEEEEECCCEEECCEEEECCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA