Click here to switch to the map view.

The map label for this gene is yadH [H]

Identifier: 209696026

GI number: 209696026

Start: 2829036

End: 2829806

Strand: Reverse

Name: yadH [H]

Synonym: VSAL_I2614

Alternate gene names: 209696026

Gene position: 2829806-2829036 (Counterclockwise)

Preceding gene: 209696027

Following gene: 209696025

Centisome position: 85.1

GC content: 36.32

Gene sequence:

>771_bases
ATGATGGATTTATATTGGACTGCATTTAAAAGTCTTATTTCAAAAGAGATAAAACGTTTTACTCGTATTTGGGTTCAAAC
GTTAGTTCCTCCAGCGATTACCATGACACTTTATTTTATTATTTTTGGTAATTTAATCGGCTCCCGTATTGGTGAAATGA
GTGGTTTTAGTTACATGGAATACATTGTTCCTGGTTTAATTATGATGTCAGTGATTACTAACTCTTATTCAAATGTGGCT
TCTTCATTTTTTAGTGCGAAGTTTCAAAAGAACATTGAAGAGCTTCTCGTTGCGCCTGTGCCTAACTATATCATTATTGC
TGGTTTTGTCGGTGGTGGTGTCGTACGCGGGCTTCTCGTGGGTGCATTAGTTACCTTTGTCTCTTTGTTTTTTGTTGATA
TTCAAATTGCTCATATTGGCGTTATTATTTTAACGGTTCTTATGACGTCGATTGTTTTTTCTCTTGGTGGTCTAATTAAT
GCTGTTTTTGCGCGAACTTTTGATGACATCAGTATTATTCCAACATTTATTCTAACGCCATTAACGTACTTGGGCGGCGT
TTTTTACTCGATTAATTTATTGCCCGAATTCTGGCAAAGCGTATCTAAATTAAACCCAATTGTTTATATGGTAAACGCAT
TCCGTTATGGTTTTTTGGGAGTGTCAGATGTTGGTATTGGAGTGGCTTTTTCTGTACTGACGGGGCTTATTCTTGGTTTG
TACGGTGTGGCTTGGTACTTAATATCAAAAGGTATTGGCTTAAGAAGTTAA

Upstream 100 bases:

>100_bases
AGTTAAATCACCAAGGAGTTAATGTGCTGTCTATGCGTAATAAGGCAAACCGATTAGAAGAGCTATTTGTTAGTATTGTT
CGTAATGGAGATGCTAAGTA

Downstream 100 bases:

>100_bases
TTTAAGGTAAGCGTGCGGGGAACTACACCTAACAAATAAAATTCATTATGCGTATCTTACGATCTTTCATTTAACGAGAA
CGTAATTATGCAAAAAGATA

Product: ABC transporter transmembrane protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 256; Mature: 256

Protein sequence:

>256_residues
MMDLYWTAFKSLISKEIKRFTRIWVQTLVPPAITMTLYFIIFGNLIGSRIGEMSGFSYMEYIVPGLIMMSVITNSYSNVA
SSFFSAKFQKNIEELLVAPVPNYIIIAGFVGGGVVRGLLVGALVTFVSLFFVDIQIAHIGVIILTVLMTSIVFSLGGLIN
AVFARTFDDISIIPTFILTPLTYLGGVFYSINLLPEFWQSVSKLNPIVYMVNAFRYGFLGVSDVGIGVAFSVLTGLILGL
YGVAWYLISKGIGLRS

Sequences:

>Translated_256_residues
MMDLYWTAFKSLISKEIKRFTRIWVQTLVPPAITMTLYFIIFGNLIGSRIGEMSGFSYMEYIVPGLIMMSVITNSYSNVA
SSFFSAKFQKNIEELLVAPVPNYIIIAGFVGGGVVRGLLVGALVTFVSLFFVDIQIAHIGVIILTVLMTSIVFSLGGLIN
AVFARTFDDISIIPTFILTPLTYLGGVFYSINLLPEFWQSVSKLNPIVYMVNAFRYGFLGVSDVGIGVAFSVLTGLILGL
YGVAWYLISKGIGLRS
>Mature_256_residues
MMDLYWTAFKSLISKEIKRFTRIWVQTLVPPAITMTLYFIIFGNLIGSRIGEMSGFSYMEYIVPGLIMMSVITNSYSNVA
SSFFSAKFQKNIEELLVAPVPNYIIIAGFVGGGVVRGLLVGALVTFVSLFFVDIQIAHIGVIILTVLMTSIVFSLGGLIN
AVFARTFDDISIIPTFILTPLTYLGGVFYSINLLPEFWQSVSKLNPIVYMVNAFRYGFLGVSDVGIGVAFSVLTGLILGL
YGVAWYLISKGIGLRS

Specific function: Unknown

COG id: COG0842

COG function: function code V; ABC-type multidrug transport system, permease component

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-2 domain [H]

Homologues:

Organism=Escherichia coli, GI1786320, Length=256, Percent_Identity=69.140625, Blast_Score=364, Evalue=1e-102,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000412
- InterPro:   IPR013526
- InterPro:   IPR013525 [H]

Pfam domain/function: PF01061 ABC2_membrane [H]

EC number: NA

Molecular weight: Translated: 28145; Mature: 28145

Theoretical pI: Translated: 9.37; Mature: 9.37

Prosite motif: PS51012 ABC_TM2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.5 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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HHHHHHHHHCCCCCCC
>Mature Secondary Structure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HHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]