Definition Aliivibrio salmonicida LFI1238 chromosome 1, complete genome.
Accession NC_011312
Length 3,325,165

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The map label for this gene is sfsA

Identifier: 209696018

GI number: 209696018

Start: 2820700

End: 2821407

Strand: Direct

Name: sfsA

Synonym: VSAL_I2604

Alternate gene names: 209696018

Gene position: 2820700-2821407 (Clockwise)

Preceding gene: 209696010

Following gene: 209696019

Centisome position: 84.83

GC content: 37.71

Gene sequence:

>708_bases
ATGAAATTTGAAGCCAAATTAGAGTCTGGAATATTAATAAGACGTTATAAACGCTTTTTAACAGACATAAAGTTACCCGA
TAAAAGTGAACGAACAATACATTGTGCGAACTCTGGAGCGATGACTGGCTGCGCAGAACCAGGCAATACGGTGTTTTTTT
CAACATCCAGTAACCTAAAGCGCAAATACCCTAACAGTTGGGAGCTCAGCGTCACAGAACATAATCACACAATATGCGTT
AATACCATCCGAGCAAATCAATTGGTTGTTGAAGCCATTATCAATAAAGAGATTGATGAGTTAGTTAATTACGCAGAGTT
AAAAACGGAAGTAAAATATGGTTCAGAAAATAGCCGTATTGATATTTTTCTCAGTGCAGAAATGCTGCCTGACTGCTATA
TTGAAGTGAAGAGTGTGACTCTATTGGATGAATCTGGGCAAGGCTATTTTCCTGACTCAGTCACAACAAGAGGACAAAAA
CACCTTAGAGAACTGACTGAAATAGCGCAAAATGGACAAAAAGCCGTTTTATTTTTTGCTGTTTTGCATTCAGGTATTGA
AAAAGTCTCTATCGCACACCATATAGACCAACAATATTATTCTTTATTATTAGAAGCGATAGAAAGTGGGGTCACTGTAC
TTTGCTACCAAGCAGAGATGTCACCAACAGAGATGAAGATCGTACGCAAGCTACCTTTTAGTATTTAA

Upstream 100 bases:

>100_bases
ATCAGTGATGGGATCACTCTTTCAATCGGCAACTGTGACAATGTTCTCGCCTTATGGCATTATCTCGAATTAAACCATTG
TACAAAAAAACAGTAGTTAA

Downstream 100 bases:

>100_bases
TTGCATTTAATGGCAATAAATACATTCTTTTGAAGAAAAGTGCTACGTTCTTGATACTAGATCTCAATTGGTGAAATCAA
TATTTGATTGCCCCTTTTCT

Product: sugar fermentation stimulation protein A

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 235; Mature: 235

Protein sequence:

>235_residues
MKFEAKLESGILIRRYKRFLTDIKLPDKSERTIHCANSGAMTGCAEPGNTVFFSTSSNLKRKYPNSWELSVTEHNHTICV
NTIRANQLVVEAIINKEIDELVNYAELKTEVKYGSENSRIDIFLSAEMLPDCYIEVKSVTLLDESGQGYFPDSVTTRGQK
HLRELTEIAQNGQKAVLFFAVLHSGIEKVSIAHHIDQQYYSLLLEAIESGVTVLCYQAEMSPTEMKIVRKLPFSI

Sequences:

>Translated_235_residues
MKFEAKLESGILIRRYKRFLTDIKLPDKSERTIHCANSGAMTGCAEPGNTVFFSTSSNLKRKYPNSWELSVTEHNHTICV
NTIRANQLVVEAIINKEIDELVNYAELKTEVKYGSENSRIDIFLSAEMLPDCYIEVKSVTLLDESGQGYFPDSVTTRGQK
HLRELTEIAQNGQKAVLFFAVLHSGIEKVSIAHHIDQQYYSLLLEAIESGVTVLCYQAEMSPTEMKIVRKLPFSI
>Mature_235_residues
MKFEAKLESGILIRRYKRFLTDIKLPDKSERTIHCANSGAMTGCAEPGNTVFFSTSSNLKRKYPNSWELSVTEHNHTICV
NTIRANQLVVEAIINKEIDELVNYAELKTEVKYGSENSRIDIFLSAEMLPDCYIEVKSVTLLDESGQGYFPDSVTTRGQK
HLRELTEIAQNGQKAVLFFAVLHSGIEKVSIAHHIDQQYYSLLLEAIESGVTVLCYQAEMSPTEMKIVRKLPFSI

Specific function: Probable Regulatory Factor Involved In Maltose Metabolism. [C]

COG id: COG1489

COG function: function code R; DNA-binding protein, stimulates sugar fermentation

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sfsA family

Homologues:

Organism=Escherichia coli, GI1786340, Length=235, Percent_Identity=57.4468085106383, Blast_Score=287, Evalue=3e-79,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): SFSA_ALISL (B6ELD6)

Other databases:

- EMBL:   FM178379
- RefSeq:   YP_002263948.1
- GeneID:   6988681
- GenomeReviews:   FM178379_GR
- KEGG:   vsa:VSAL_I2604
- HOGENOM:   HBG655520
- OMA:   NTGSMLN
- ProtClustDB:   CLSK2396225
- HAMAP:   MF_00095
- InterPro:   IPR005224
- TIGRFAMs:   TIGR00230

Pfam domain/function: PF03749 SfsA

EC number: NA

Molecular weight: Translated: 26570; Mature: 26570

Theoretical pI: Translated: 6.40; Mature: 6.40

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.1 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
2.1 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKFEAKLESGILIRRYKRFLTDIKLPDKSERTIHCANSGAMTGCAEPGNTVFFSTSSNLK
CCCCHHHHCCHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCCCCCCCCEEEEECCCCHH
RKYPNSWELSVTEHNHTICVNTIRANQLVVEAIINKEIDELVNYAELKTEVKYGSENSRI
HCCCCCEEEEEEECCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEE
DIFLSAEMLPDCYIEVKSVTLLDESGQGYFPDSVTTRGQKHLRELTEIAQNGQKAVLFFA
EEEEECCCCCCEEEEEEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHH
VLHSGIEKVSIAHHIDQQYYSLLLEAIESGVTVLCYQAEMSPTEMKIVRKLPFSI
HHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHCCCCC
>Mature Secondary Structure
MKFEAKLESGILIRRYKRFLTDIKLPDKSERTIHCANSGAMTGCAEPGNTVFFSTSSNLK
CCCCHHHHCCHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCCCCCCCCEEEEECCCCHH
RKYPNSWELSVTEHNHTICVNTIRANQLVVEAIINKEIDELVNYAELKTEVKYGSENSRI
HCCCCCEEEEEEECCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEE
DIFLSAEMLPDCYIEVKSVTLLDESGQGYFPDSVTTRGQKHLRELTEIAQNGQKAVLFFA
EEEEECCCCCCEEEEEEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHH
VLHSGIEKVSIAHHIDQQYYSLLLEAIESGVTVLCYQAEMSPTEMKIVRKLPFSI
HHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA