| Definition | Aliivibrio salmonicida LFI1238 chromosome 1, complete genome. |
|---|---|
| Accession | NC_011312 |
| Length | 3,325,165 |
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The map label for this gene is 209695885
Identifier: 209695885
GI number: 209695885
Start: 2637189
End: 2638205
Strand: Direct
Name: 209695885
Synonym: VSAL_I2464
Alternate gene names: NA
Gene position: 2637189-2638205 (Clockwise)
Preceding gene: 209695884
Following gene: 209695886
Centisome position: 79.31
GC content: 41.0
Gene sequence:
>1017_bases ATGTCTAAATATCAAGAAGCAAAACGAATCGTTCGTGCATATTTTGATGCGATAGAAAACGCAACTCACGAAAATGTATC CGACATACTAAAAGCACACACTTCTGACGATTATTTATGGCGCAGTGTTTATCCATTTCGTGAACAAAAAGGGGCACAAG CTGCTGCAGATACTTTTTGGTCACCGATACTAAAATCAATGACACGCATGCAACGTCGTCAAGATATCTTCATCGGTGGT AATAACGAAATTAATCCAGATGAAATTTGGGTAATGAGTATGGGCCACTTTATGGGTCTATTCGATGCTGAATTTTTAGG TATGCGCCCTACCGGAAAAATAATGAATGTTCGTTATGCTGAATTTAACTGCGTTCAAAATGGAAAAATAACGAAAACAG GTCTTTTCTTAGACCTTTTAGGCATGATGGACCAAGCGGGTTGCTATCCATTACCCCCTTCAACCGGTAAGCATTTTGTT TATCCTGGACCACGCAACCATGATGGTCTGTTGTTTGAAGATGCTGCACCAGAAGAAGGAATTGCAACGCTGGCATTGGT GAATAAAATGGTCGATGACCTTTCAGCCCTTAATGACAGTGGTGCAATGGGATGCCCTCCTGAAGTCTTAGCAAAAAGCT GGTCTAAAGATATGATTTGGTATGGCCCTTGTGGTATCGGTGCTTCTTACACCATCCCTCGCTACCAACAACAACATCAA TTACCATTCCGTAATAACTTAAAAGATAAAAAATTCAATGGTCACGTCTGTCGCTTTGCTGAGGGGAATTTTTCGTGTTT CTTCGGATGGCCAAATCTATCAAATACGCCAACAGGTGGTTTCTTGGGTATGACTGGCGGCGAAGTGCGTGCTGATATGC AAGTCGTCGATGTGTATTACCGAGATAACGATAAACTGTCTGAAAACTGGGTATTAATCGATCTTCCTTATTGGCTAAAA CAACAAGGCTTAGATGTTTTTGAACGAACTCAAACAATCATGAATCCTGAGTTGTAA
Upstream 100 bases:
>100_bases ATAAAAAGCGTAAAACAGCACAAGCCTAATTCAAAATAAGTTACTCACAATCAAAATAGGCGAGCTTCATTAAGCTCGCC AATATTAAGAGAGAAATAAG
Downstream 100 bases:
>100_bases TATACCCAAAATAACGAATAATCTTTTAGATTATCGCAACCTTATCCGGTGTGTGCCTTATCATAAATGAGGCACTCTCC CATCACCGTTTAGACGTTGA
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 338; Mature: 337
Protein sequence:
>338_residues MSKYQEAKRIVRAYFDAIENATHENVSDILKAHTSDDYLWRSVYPFREQKGAQAAADTFWSPILKSMTRMQRRQDIFIGG NNEINPDEIWVMSMGHFMGLFDAEFLGMRPTGKIMNVRYAEFNCVQNGKITKTGLFLDLLGMMDQAGCYPLPPSTGKHFV YPGPRNHDGLLFEDAAPEEGIATLALVNKMVDDLSALNDSGAMGCPPEVLAKSWSKDMIWYGPCGIGASYTIPRYQQQHQ LPFRNNLKDKKFNGHVCRFAEGNFSCFFGWPNLSNTPTGGFLGMTGGEVRADMQVVDVYYRDNDKLSENWVLIDLPYWLK QQGLDVFERTQTIMNPEL
Sequences:
>Translated_338_residues MSKYQEAKRIVRAYFDAIENATHENVSDILKAHTSDDYLWRSVYPFREQKGAQAAADTFWSPILKSMTRMQRRQDIFIGG NNEINPDEIWVMSMGHFMGLFDAEFLGMRPTGKIMNVRYAEFNCVQNGKITKTGLFLDLLGMMDQAGCYPLPPSTGKHFV YPGPRNHDGLLFEDAAPEEGIATLALVNKMVDDLSALNDSGAMGCPPEVLAKSWSKDMIWYGPCGIGASYTIPRYQQQHQ LPFRNNLKDKKFNGHVCRFAEGNFSCFFGWPNLSNTPTGGFLGMTGGEVRADMQVVDVYYRDNDKLSENWVLIDLPYWLK QQGLDVFERTQTIMNPEL >Mature_337_residues SKYQEAKRIVRAYFDAIENATHENVSDILKAHTSDDYLWRSVYPFREQKGAQAAADTFWSPILKSMTRMQRRQDIFIGGN NEINPDEIWVMSMGHFMGLFDAEFLGMRPTGKIMNVRYAEFNCVQNGKITKTGLFLDLLGMMDQAGCYPLPPSTGKHFVY PGPRNHDGLLFEDAAPEEGIATLALVNKMVDDLSALNDSGAMGCPPEVLAKSWSKDMIWYGPCGIGASYTIPRYQQQHQL PFRNNLKDKKFNGHVCRFAEGNFSCFFGWPNLSNTPTGGFLGMTGGEVRADMQVVDVYYRDNDKLSENWVLIDLPYWLKQ QGLDVFERTQTIMNPEL
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 38352; Mature: 38221
Theoretical pI: Translated: 5.65; Mature: 5.65
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.8 %Cys (Translated Protein) 4.7 %Met (Translated Protein) 6.5 %Cys+Met (Translated Protein) 1.8 %Cys (Mature Protein) 4.5 %Met (Mature Protein) 6.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSKYQEAKRIVRAYFDAIENATHENVSDILKAHTSDDYLWRSVYPFREQKGAQAAADTFW CCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHCCCCCHHHHHCCCHHHHCCCHHHHHHHH SPILKSMTRMQRRQDIFIGGNNEINPDEIWVMSMGHFMGLFDAEFLGMRPTGKIMNVRYA HHHHHHHHHHHHHCEEEECCCCCCCCCCEEEEEHHHHHHHHHHHHCCCCCCCCEEEEEEE EFNCVQNGKITKTGLFLDLLGMMDQAGCYPLPPSTGKHFVYPGPRNHDGLLFEDAAPEEG EEEEECCCCEEHHHHHHHHHHHHHHCCCCCCCCCCCCEEECCCCCCCCCEEEECCCCCCH IATLALVNKMVDDLSALNDSGAMGCPPEVLAKSWSKDMIWYGPCGIGASYTIPRYQQQHQ HHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHCCCCCCEEEECCCCCCCCCCCCHHHHCC LPFRNNLKDKKFNGHVCRFAEGNFSCFFGWPNLSNTPTGGFLGMTGGEVRADMQVVDVYY CCHHCCCCCCCCCCCEEEEECCCEEEEEECCCCCCCCCCCEEECCCCCCCCCEEEEEEEE RDNDKLSENWVLIDLPYWLKQQGLDVFERTQTIMNPEL CCCCCCCCCEEEEECCHHHHHCCCHHHHHHHHHCCCCC >Mature Secondary Structure SKYQEAKRIVRAYFDAIENATHENVSDILKAHTSDDYLWRSVYPFREQKGAQAAADTFW CHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHCCCCCHHHHHCCCHHHHCCCHHHHHHHH SPILKSMTRMQRRQDIFIGGNNEINPDEIWVMSMGHFMGLFDAEFLGMRPTGKIMNVRYA HHHHHHHHHHHHHCEEEECCCCCCCCCCEEEEEHHHHHHHHHHHHCCCCCCCCEEEEEEE EFNCVQNGKITKTGLFLDLLGMMDQAGCYPLPPSTGKHFVYPGPRNHDGLLFEDAAPEEG EEEEECCCCEEHHHHHHHHHHHHHHCCCCCCCCCCCCEEECCCCCCCCCEEEECCCCCCH IATLALVNKMVDDLSALNDSGAMGCPPEVLAKSWSKDMIWYGPCGIGASYTIPRYQQQHQ HHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHCCCCCCEEEECCCCCCCCCCCCHHHHCC LPFRNNLKDKKFNGHVCRFAEGNFSCFFGWPNLSNTPTGGFLGMTGGEVRADMQVVDVYY CCHHCCCCCCCCCCCEEEEECCCEEEEEECCCCCCCCCCCEEECCCCCCCCCEEEEEEEE RDNDKLSENWVLIDLPYWLKQQGLDVFERTQTIMNPEL CCCCCCCCCEEEEECCHHHHHCCCHHHHHHHHHCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA