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The map label for this gene is rdgC [H]

Identifier: 209695881

GI number: 209695881

Start: 2630634

End: 2631548

Strand: Direct

Name: rdgC [H]

Synonym: VSAL_I2458

Alternate gene names: 209695881

Gene position: 2630634-2631548 (Clockwise)

Preceding gene: 209695872

Following gene: 209695882

Centisome position: 79.11

GC content: 38.8

Gene sequence:

>915_bases
ATGATGTGGTTTAAAAATTGTTTAATTTATCGTTTTACTAAAGAGATTGATATCAATCCTGAGCAACTTGAAAAACAACT
GAACGATTTCCGTTTCACACCTTGTGGCAGCCAAGATATGCAAAAATTTGGCTGGGTAACTGCAATGGGACGTCATGGCG
ATATGCTGACTCACGTAGCAAGCAACAACATTCTTATCTGTGTTAAGAAAGAAGAAAAAATGCTTCCGGCTTCTGTAATC
AAAGAATCAATGAACGCAAAAATTGATGCGATGGAACTTGAACAAGGTCGTCCTCTTAAGAAAAAAGAGAAAGATTCAAT
CAAAGATGACATCGTGATTGATTTACTGCCTCGTGCATTCAGCAAGCACCAACAAACGTATGCGTTAATTCTTCCTGAAT
CTGGTTTTATTATTGTTGATGCTGGTAGCTACAAAAAAGCAGAAGATTTATTAGCATTACTGCGTAAATCTATTGGCAGC
TTACCTGTTGTTCCCCTAACGGCCACTCAACCGATTGAGAATGCATTAACCGAATGGGTTAAAACAGGCGTCACTCCTCA
AGGTTTTGAGATGGGTGAAGAAGCAGAATTAAAAGCGATTTTAGAAGACGGCGGCGTGATCCGTTGTAAACAACAAGAAT
TAGTGTGTGATGAAATTCACGCTCATATTGATGCTAACAAAGTTGTGACTAAATTAGCGCTAACATGGCAAGACCGTTTA
GAGTTTATCCTTGCAGATGATTTATCGCTAAAACGCCTTAAATTCAGCGATGATGTAAAAGATCAAAACGAAGATATTGG
TTTTGAAGATAAAGCCGCTCGTTTTGATGCTGATTTCTCTCTAATGAGTTCAGAGCTTGACGCTCTACTGCCTGACCTTT
TCAAAGCACTTGGTGGCATTGAAGAGAAAGAGTAA

Upstream 100 bases:

>100_bases
ACCTTGTGGCCATTTCCTTAAAATCCCGAAAACTCTACAAGCATAATGCGTCAAAATCTCCTATCATAAGCGGACTTAAA
AAAGACAGGAATTCAGCAGC

Downstream 100 bases:

>100_bases
CTTTAGAATAAAAAAGGGTGGTTTGACATCATAATCAAGCCACCTTTTTCTCCTCGATACTCATACCTATCATCATTCAT
GAGAAAGGGCAGAATAAATC

Product: recombination associated protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 304; Mature: 304

Protein sequence:

>304_residues
MMWFKNCLIYRFTKEIDINPEQLEKQLNDFRFTPCGSQDMQKFGWVTAMGRHGDMLTHVASNNILICVKKEEKMLPASVI
KESMNAKIDAMELEQGRPLKKKEKDSIKDDIVIDLLPRAFSKHQQTYALILPESGFIIVDAGSYKKAEDLLALLRKSIGS
LPVVPLTATQPIENALTEWVKTGVTPQGFEMGEEAELKAILEDGGVIRCKQQELVCDEIHAHIDANKVVTKLALTWQDRL
EFILADDLSLKRLKFSDDVKDQNEDIGFEDKAARFDADFSLMSSELDALLPDLFKALGGIEEKE

Sequences:

>Translated_304_residues
MMWFKNCLIYRFTKEIDINPEQLEKQLNDFRFTPCGSQDMQKFGWVTAMGRHGDMLTHVASNNILICVKKEEKMLPASVI
KESMNAKIDAMELEQGRPLKKKEKDSIKDDIVIDLLPRAFSKHQQTYALILPESGFIIVDAGSYKKAEDLLALLRKSIGS
LPVVPLTATQPIENALTEWVKTGVTPQGFEMGEEAELKAILEDGGVIRCKQQELVCDEIHAHIDANKVVTKLALTWQDRL
EFILADDLSLKRLKFSDDVKDQNEDIGFEDKAARFDADFSLMSSELDALLPDLFKALGGIEEKE
>Mature_304_residues
MMWFKNCLIYRFTKEIDINPEQLEKQLNDFRFTPCGSQDMQKFGWVTAMGRHGDMLTHVASNNILICVKKEEKMLPASVI
KESMNAKIDAMELEQGRPLKKKEKDSIKDDIVIDLLPRAFSKHQQTYALILPESGFIIVDAGSYKKAEDLLALLRKSIGS
LPVVPLTATQPIENALTEWVKTGVTPQGFEMGEEAELKAILEDGGVIRCKQQELVCDEIHAHIDANKVVTKLALTWQDRL
EFILADDLSLKRLKFSDDVKDQNEDIGFEDKAARFDADFSLMSSELDALLPDLFKALGGIEEKE

Specific function: May be involved in recombination [H]

COG id: COG2974

COG function: function code L; DNA recombination-dependent growth factor C

Gene ontology:

Cell location: Cytoplasm, nucleoid [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rdgC family [H]

Homologues:

Organism=Escherichia coli, GI1786592, Length=299, Percent_Identity=59.866220735786, Blast_Score=372, Evalue=1e-104,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR007476 [H]

Pfam domain/function: PF04381 RdgC [H]

EC number: NA

Molecular weight: Translated: 34349; Mature: 34349

Theoretical pI: Translated: 4.70; Mature: 4.70

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
4.9 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
4.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMWFKNCLIYRFTKEIDINPEQLEKQLNDFRFTPCGSQDMQKFGWVTAMGRHGDMLTHVA
CCHHHHHHEEEECCCCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHEEECCCCCHHHEEC
SNNILICVKKEEKMLPASVIKESMNAKIDAMELEQGRPLKKKEKDSIKDDIVIDLLPRAF
CCCEEEEEECCCCCCCHHHHHHHHCCCEEEEECCCCCCCCHHHHHCHHHHHHHHHHHHHH
SKHQQTYALILPESGFIIVDAGSYKKAEDLLALLRKSIGSLPVVPLTATQPIENALTEWV
HHCCCEEEEEECCCCEEEEECCCCCCHHHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHH
KTGVTPQGFEMGEEAELKAILEDGGVIRCKQQELVCDEIHAHIDANKVVTKLALTWQDRL
HHCCCCCCCCCCCHHHHHHHHHCCCEEEECHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH
EFILADDLSLKRLKFSDDVKDQNEDIGFEDKAARFDADFSLMSSELDALLPDLFKALGGI
HEEEECCCCCEEECCCCCCCCCCCCCCCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHCCC
EEKE
CCCC
>Mature Secondary Structure
MMWFKNCLIYRFTKEIDINPEQLEKQLNDFRFTPCGSQDMQKFGWVTAMGRHGDMLTHVA
CCHHHHHHEEEECCCCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHEEECCCCCHHHEEC
SNNILICVKKEEKMLPASVIKESMNAKIDAMELEQGRPLKKKEKDSIKDDIVIDLLPRAF
CCCEEEEEECCCCCCCHHHHHHHHCCCEEEEECCCCCCCCHHHHHCHHHHHHHHHHHHHH
SKHQQTYALILPESGFIIVDAGSYKKAEDLLALLRKSIGSLPVVPLTATQPIENALTEWV
HHCCCEEEEEECCCCEEEEECCCCCCHHHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHH
KTGVTPQGFEMGEEAELKAILEDGGVIRCKQQELVCDEIHAHIDANKVVTKLALTWQDRL
HHCCCCCCCCCCCHHHHHHHHHCCCEEEECHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH
EFILADDLSLKRLKFSDDVKDQNEDIGFEDKAARFDADFSLMSSELDALLPDLFKALGGI
HEEEECCCCCEEECCCCCCCCCCCCCCCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHCCC
EEKE
CCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA