| Definition | Aliivibrio salmonicida LFI1238 chromosome 1, complete genome. |
|---|---|
| Accession | NC_011312 |
| Length | 3,325,165 |
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The map label for this gene is 209695787
Identifier: 209695787
GI number: 209695787
Start: 2536014
End: 2536403
Strand: Reverse
Name: 209695787
Synonym: VSAL_I2361
Alternate gene names: NA
Gene position: 2536403-2536014 (Counterclockwise)
Preceding gene: 209695788
Following gene: 209695786
Centisome position: 76.28
GC content: 39.23
Gene sequence:
>390_bases ATGGATTTATCAACAGGTGCACTTCTTTTTAGTGCTTTATTAAGCCCGTTAGCTATGGCTGATTGGCAGCTAGATTTGGG GTTAGAAATAAATCGCCCTGACTTGCAGCGCATTACTAATTCTTCGACATCTTTAGTGTTGGGCGAAGAGACGCTTGTGT TCAATTCGATAGATAAGCAGTCCCAAGTGAAAGCATGGGCTGAAATTAAAAATATTAATGCTGAGAATGTAGAAATTGCT TTTCGGGTGACAGAAGAGGGAAATGGAAGCGTTCGTACATTGTGTGCACCGACAATAATCACTAAATTAAATAATCAAGA GTCCTATATGGTGTCTGATTCTTCAGCGAATGAGACCGTTAAATTGTCCGTAGAAGTAATTTCTTCGTAA
Upstream 100 bases:
>100_bases AGAGTGCAGTGGTTATTTTATTACTTAGCTGGTTTTTGATTTTTTTATTCCGAAGCAAAAGAGTCAAAATATGCTTTAGT CTTACTTAAGAGGGAAGACG
Downstream 100 bases:
>100_bases TCTCTTATTTATAATCAAACAATCTAATGCTTAATTTCATATAATGAACTCAGTTAATTCAAAATAAGAAAGGAACTGAG TTCATGTCTTACACTCCTCA
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 129; Mature: 129
Protein sequence:
>129_residues MDLSTGALLFSALLSPLAMADWQLDLGLEINRPDLQRITNSSTSLVLGEETLVFNSIDKQSQVKAWAEIKNINAENVEIA FRVTEEGNGSVRTLCAPTIITKLNNQESYMVSDSSANETVKLSVEVISS
Sequences:
>Translated_129_residues MDLSTGALLFSALLSPLAMADWQLDLGLEINRPDLQRITNSSTSLVLGEETLVFNSIDKQSQVKAWAEIKNINAENVEIA FRVTEEGNGSVRTLCAPTIITKLNNQESYMVSDSSANETVKLSVEVISS >Mature_129_residues MDLSTGALLFSALLSPLAMADWQLDLGLEINRPDLQRITNSSTSLVLGEETLVFNSIDKQSQVKAWAEIKNINAENVEIA FRVTEEGNGSVRTLCAPTIITKLNNQESYMVSDSSANETVKLSVEVISS
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 14061; Mature: 14061
Theoretical pI: Translated: 4.11; Mature: 4.11
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 2.3 %Met (Translated Protein) 3.1 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 2.3 %Met (Mature Protein) 3.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MDLSTGALLFSALLSPLAMADWQLDLGLEINRPDLQRITNSSTSLVLGEETLVFNSIDKQ CCCCHHHHHHHHHHHHHHHCCEEEECCEEECCCHHHHHCCCCCEEEECCCEEEEECCCCH SQVKAWAEIKNINAENVEIAFRVTEEGNGSVRTLCAPTIITKLNNQESYMVSDSSANETV HHHHHHHHHHCCCCCCEEEEEEEECCCCCCEEEEECCCCEECCCCCCEEEEECCCCCCEE KLSVEVISS EEEEEEECC >Mature Secondary Structure MDLSTGALLFSALLSPLAMADWQLDLGLEINRPDLQRITNSSTSLVLGEETLVFNSIDKQ CCCCHHHHHHHHHHHHHHHCCEEEECCEEECCCHHHHHCCCCCEEEECCCEEEEECCCCH SQVKAWAEIKNINAENVEIAFRVTEEGNGSVRTLCAPTIITKLNNQESYMVSDSSANETV HHHHHHHHHHCCCCCCEEEEEEEECCCCCCEEEEECCCCEECCCCCCEEEEECCCCCCEE KLSVEVISS EEEEEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA