| Definition | Aliivibrio salmonicida LFI1238 chromosome 1, complete genome. |
|---|---|
| Accession | NC_011312 |
| Length | 3,325,165 |
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The map label for this gene is 209695773
Identifier: 209695773
GI number: 209695773
Start: 2519120
End: 2520256
Strand: Direct
Name: 209695773
Synonym: VSAL_I2346
Alternate gene names: NA
Gene position: 2519120-2520256 (Clockwise)
Preceding gene: 209695770
Following gene: 209695774
Centisome position: 75.76
GC content: 37.55
Gene sequence:
>1137_bases ATGAAAAAAATAATTTATTTAATTACCTCTTTATTTACAATGTGTTACACCGTACAGGTTAATGCCGAGTGGTTCGAGGT CACAGGTTCTGCAAGTGTTCTTACCAGTAAAAATGCGGCAAGAACCCATGCACTAGAAGATGCAGCTTACCAAGCGATGC TTTTCTCAGGGGCCGATATTAGCCGCCTAAAAGATCTTCGTGTCTTTTTAGAAAACGATAATAAACACTATCAATTTAGC GGAACTGAAGTTCGTAGTATTGAAGTGATTAAAGAAAAAAAGAAAAACGGCAAGCTGTACGTTACCACTCGTATTGACAT TTACCCTTCGGCAAACAGTTGCCATATTGGGCAATACAAAAAAACGGTAATGACAAGCGAAATCACGATCGACTCCCCAC AACAAGCGGTTATGGGTAAGGTTTATCAGATGGGTGAAGATCTCAGCACCGTATTCGCTAGACAGTTAGATAAAGAATCA CAAAGCTTTGTGTCTGTCGGTACGTCTCATATCCGCATTGATAAACGTCAACCAGAAGTCGCTAAAATGATTGCCGAAGA TCATGGGGCTCAATATATTTACTCTGGTCAAATTACAGATTTAAGTGCAACCATTGAACAAAATTTATTAAAGAAAGACA CCATTAATCGTCAGTTTGCAATTGACGTTGCCGTCATTGATGGAAAAACAGGACAAACAGTTTACAGCAATAATTATCGT GATGTTGCTCAATGGGATTTCCCTAAAACCAGCGAAGTCGATACACAAAGTGCTCGTTTTTGGACTTCAGCTTTTGGTGA AATGGTACTTCGTGTTAATCGTGACATGATGCTCGATTTAGAAAATAAATTCGCTTGTAAAATGACATTGCCACAAGTAG TAAATATCAATAACAATCGTATCACGATGGATCTAGGTCGTATTCATGGTGTTAAAAAAGGCGATACGTTGGATTTATGG CACACTGGTGCATTCATTGATCAAAATGGTTTACCTCGTAATAAGGTAGCCAAAACGAATATAACATTAACGGTTGATCG CGTTTATGAACAAAATGCTGAATTAATCGTTAATCAACCTCAATTAATTAACAGTATTCAAATTGGTGATGTTATGCATA AAGTCACACCAAAATAA
Upstream 100 bases:
>100_bases ACAAAACTTGCTATAGTCTAATAAACGCAATTTGTAAGTACTTTTATCAATCAACAAATATTAGTTAGCAAATTTCATAC CCATTTGGCAGATAGTAACG
Downstream 100 bases:
>100_bases TAAGTTACTCGCATTTATTTTATGGAAAGACAGCCCTGAGGCTGTTTTTCCATTAACGCGATCCTGCCCATCGTTTTCTG TTTGCCATTACGTTATCATT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 378; Mature: 378
Protein sequence:
>378_residues MKKIIYLITSLFTMCYTVQVNAEWFEVTGSASVLTSKNAARTHALEDAAYQAMLFSGADISRLKDLRVFLENDNKHYQFS GTEVRSIEVIKEKKKNGKLYVTTRIDIYPSANSCHIGQYKKTVMTSEITIDSPQQAVMGKVYQMGEDLSTVFARQLDKES QSFVSVGTSHIRIDKRQPEVAKMIAEDHGAQYIYSGQITDLSATIEQNLLKKDTINRQFAIDVAVIDGKTGQTVYSNNYR DVAQWDFPKTSEVDTQSARFWTSAFGEMVLRVNRDMMLDLENKFACKMTLPQVVNINNNRITMDLGRIHGVKKGDTLDLW HTGAFIDQNGLPRNKVAKTNITLTVDRVYEQNAELIVNQPQLINSIQIGDVMHKVTPK
Sequences:
>Translated_378_residues MKKIIYLITSLFTMCYTVQVNAEWFEVTGSASVLTSKNAARTHALEDAAYQAMLFSGADISRLKDLRVFLENDNKHYQFS GTEVRSIEVIKEKKKNGKLYVTTRIDIYPSANSCHIGQYKKTVMTSEITIDSPQQAVMGKVYQMGEDLSTVFARQLDKES QSFVSVGTSHIRIDKRQPEVAKMIAEDHGAQYIYSGQITDLSATIEQNLLKKDTINRQFAIDVAVIDGKTGQTVYSNNYR DVAQWDFPKTSEVDTQSARFWTSAFGEMVLRVNRDMMLDLENKFACKMTLPQVVNINNNRITMDLGRIHGVKKGDTLDLW HTGAFIDQNGLPRNKVAKTNITLTVDRVYEQNAELIVNQPQLINSIQIGDVMHKVTPK >Mature_378_residues MKKIIYLITSLFTMCYTVQVNAEWFEVTGSASVLTSKNAARTHALEDAAYQAMLFSGADISRLKDLRVFLENDNKHYQFS GTEVRSIEVIKEKKKNGKLYVTTRIDIYPSANSCHIGQYKKTVMTSEITIDSPQQAVMGKVYQMGEDLSTVFARQLDKES QSFVSVGTSHIRIDKRQPEVAKMIAEDHGAQYIYSGQITDLSATIEQNLLKKDTINRQFAIDVAVIDGKTGQTVYSNNYR DVAQWDFPKTSEVDTQSARFWTSAFGEMVLRVNRDMMLDLENKFACKMTLPQVVNINNNRITMDLGRIHGVKKGDTLDLW HTGAFIDQNGLPRNKVAKTNITLTVDRVYEQNAELIVNQPQLINSIQIGDVMHKVTPK
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 42757; Mature: 42757
Theoretical pI: Translated: 8.41; Mature: 8.41
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 3.4 %Met (Translated Protein) 4.2 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 3.4 %Met (Mature Protein) 4.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKKIIYLITSLFTMCYTVQVNAEWFEVTGSASVLTSKNAARTHALEDAAYQAMLFSGADI CCHHHHHHHHHHHHEEEEEECCEEEEEECCCEEEECCCCHHHHHHHHHHHHEEEECCCCH SRLKDLRVFLENDNKHYQFSGTEVRSIEVIKEKKKNGKLYVTTRIDIYPSANSCHIGQYK HHHHHEEEEEECCCCEEEECCCEEEEEHHHHHHCCCCCEEEEEEEEEEECCCCCCCCCHH KTVMTSEITIDSPQQAVMGKVYQMGEDLSTVFARQLDKESQSFVSVGTSHIRIDKRQPEV HHEEEEEEEECCCHHHHHHHHHHHCCHHHHHHHHHHCHHHHHHHHCCCEEEEEECCCCHH AKMIAEDHGAQYIYSGQITDLSATIEQNLLKKDTINRQFAIDVAVIDGKTGQTVYSNNYR HHHHHHCCCCEEEEECCEECHHHHHHHHHHHHHCCCCEEEEEEEEEECCCCCEEECCCCC DVAQWDFPKTSEVDTQSARFWTSAFGEMVLRVNRDMMLDLENKFACKMTLPQVVNINNNR CHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCCCEEEEEECCEEEECCCCE ITMDLGRIHGVKKGDTLDLWHTGAFIDQNGLPRNKVAKTNITLTVDRVYEQNAELIVNQP EEEEHHHHCCCCCCCEEEEEECCCEEECCCCCCCCEEEEEEEEEEEHHHCCCCCEEECCC QLINSIQIGDVMHKVTPK HHHCEEEHHHHHHHCCCC >Mature Secondary Structure MKKIIYLITSLFTMCYTVQVNAEWFEVTGSASVLTSKNAARTHALEDAAYQAMLFSGADI CCHHHHHHHHHHHHEEEEEECCEEEEEECCCEEEECCCCHHHHHHHHHHHHEEEECCCCH SRLKDLRVFLENDNKHYQFSGTEVRSIEVIKEKKKNGKLYVTTRIDIYPSANSCHIGQYK HHHHHEEEEEECCCCEEEECCCEEEEEHHHHHHCCCCCEEEEEEEEEEECCCCCCCCCHH KTVMTSEITIDSPQQAVMGKVYQMGEDLSTVFARQLDKESQSFVSVGTSHIRIDKRQPEV HHEEEEEEEECCCHHHHHHHHHHHCCHHHHHHHHHHCHHHHHHHHCCCEEEEEECCCCHH AKMIAEDHGAQYIYSGQITDLSATIEQNLLKKDTINRQFAIDVAVIDGKTGQTVYSNNYR HHHHHHCCCCEEEEECCEECHHHHHHHHHHHHHCCCCEEEEEEEEEECCCCCEEECCCCC DVAQWDFPKTSEVDTQSARFWTSAFGEMVLRVNRDMMLDLENKFACKMTLPQVVNINNNR CHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCCCEEEEEECCEEEECCCCE ITMDLGRIHGVKKGDTLDLWHTGAFIDQNGLPRNKVAKTNITLTVDRVYEQNAELIVNQP EEEEHHHHCCCCCCCEEEEEECCCEEECCCCCCCCEEEEEEEEEEEHHHCCCCCEEECCC QLINSIQIGDVMHKVTPK HHHCEEEHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA