| Definition | Aliivibrio salmonicida LFI1238 chromosome 1, complete genome. |
|---|---|
| Accession | NC_011312 |
| Length | 3,325,165 |
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The map label for this gene is flgA
Identifier: 209695768
GI number: 209695768
Start: 2515559
End: 2516305
Strand: Direct
Name: flgA
Synonym: VSAL_I2341
Alternate gene names: NA
Gene position: 2515559-2516305 (Clockwise)
Preceding gene: 209695750
Following gene: 209695769
Centisome position: 75.65
GC content: 39.09
Gene sequence:
>747_bases ATGGCATTTTATAATAAAAATATGATGATAATTAAAAAGCGTGATAACAAAATCACTTTTTATCGACTTATAAGCTTTAT CGGCCTATTTATAAGTTTCTTTAATACTAATGCGCATGCTGCCACAGATGAGCAACTTGAAGCAATTAAAGACTCTGCGG AGTCTTTTCTAGAATCTCAAATTGAAGTGCCGAGTAATGGCACATTAAGTCTAGAGTCCGCGCGAATAGATAGTAGAATT CATGCGACAGACTGTCCAGAACCTTTAACGTCCTCCTTGCCTGGTCGACTTAATTCCAGTGGTAATACATCCGTATTAGT GGAATGTATTGCAGATAATTGGAAGATCTATGTCCCTGTAAAAGCAGAATTAATGATGCCTTTAGTCACGGCGGCAACGT CTCTTTCAAAAGGACTCACACTCAGCGCAAATGACTTAAATTTAACCTTAGTCAACAGCCGAACGTATCGCCGAGGCGGC TATATTAATACGAATGATCTTATTGGGTCACGAATTAAACGCAGCGTTCGAGCCGGTGATGTTGTTGAAAAAAACGACAT CTGCATGGTATGTCGCAATGACAGTGTTATAATTAAAGCGGTAAAAGGGGAATTAAGTATCCTAACTAAAGGAACAGCAT TGGGTGACGCGGCTTTGGGCGATAATGTAAACGTCCAAAATAACAAATCTAAACGCATCATCAATGGCGTTGTTACTGCG GTAGGTGAAATTAGTATTCGATTTTAA
Upstream 100 bases:
>100_bases TTCACCGAATCCAGTATGCCTGTCATATATGACTCCATCTTGTGCCATGATAAATAAACCGCGAGCCTAACACAAACCCA TCAAGAGCACGGCATACCAT
Downstream 100 bases:
>100_bases GCCAGAATGTTAATTTGACTTAAATTTAATGATATTTCCTCTAAACTTTCTTAACACACCGCCGATAAGTGGAAACTGGC ATTATTTATGCTTAGTTTAA
Product: flagellar basal body P-ring biosynthesis protein FlgA
Products: NA
Alternate protein names: Flagella Basal Body P-Ring Formation Protein FlgA; Flagellar Basal Body P-Ring Biosynthesis Protein; Flagellar Basal-Body P-Ring Formation Protein FlgA; Flageller Protein FlgA; Flagellar Biosynthesis; SAF Domain-Containing Protein; Flagellar Protein; Flagellar Basal Body P-Ring Biosynthesis Protein-Like
Number of amino acids: Translated: 248; Mature: 247
Protein sequence:
>248_residues MAFYNKNMMIIKKRDNKITFYRLISFIGLFISFFNTNAHAATDEQLEAIKDSAESFLESQIEVPSNGTLSLESARIDSRI HATDCPEPLTSSLPGRLNSSGNTSVLVECIADNWKIYVPVKAELMMPLVTAATSLSKGLTLSANDLNLTLVNSRTYRRGG YINTNDLIGSRIKRSVRAGDVVEKNDICMVCRNDSVIIKAVKGELSILTKGTALGDAALGDNVNVQNNKSKRIINGVVTA VGEISIRF
Sequences:
>Translated_248_residues MAFYNKNMMIIKKRDNKITFYRLISFIGLFISFFNTNAHAATDEQLEAIKDSAESFLESQIEVPSNGTLSLESARIDSRI HATDCPEPLTSSLPGRLNSSGNTSVLVECIADNWKIYVPVKAELMMPLVTAATSLSKGLTLSANDLNLTLVNSRTYRRGG YINTNDLIGSRIKRSVRAGDVVEKNDICMVCRNDSVIIKAVKGELSILTKGTALGDAALGDNVNVQNNKSKRIINGVVTA VGEISIRF >Mature_247_residues AFYNKNMMIIKKRDNKITFYRLISFIGLFISFFNTNAHAATDEQLEAIKDSAESFLESQIEVPSNGTLSLESARIDSRIH ATDCPEPLTSSLPGRLNSSGNTSVLVECIADNWKIYVPVKAELMMPLVTAATSLSKGLTLSANDLNLTLVNSRTYRRGGY INTNDLIGSRIKRSVRAGDVVEKNDICMVCRNDSVIIKAVKGELSILTKGTALGDAALGDNVNVQNNKSKRIINGVVTAV GEISIRF
Specific function: Unknown
COG id: COG1261
COG function: function code NO; Flagellar basal body P-ring biosynthesis protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 27093; Mature: 26962
Theoretical pI: Translated: 8.90; Mature: 8.90
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.6 %Cys (Translated Protein) 2.4 %Met (Translated Protein) 4.0 %Cys+Met (Translated Protein) 1.6 %Cys (Mature Protein) 2.0 %Met (Mature Protein) 3.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAFYNKNMMIIKKRDNKITFYRLISFIGLFISFFNTNAHAATDEQLEAIKDSAESFLESQ CEEECCCEEEEEECCCEEHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHH IEVPSNGTLSLESARIDSRIHATDCPEPLTSSLPGRLNSSGNTSVLVECIADNWKIYVPV CCCCCCCEEEEECCCCCCEEECCCCCCHHHHCCCCCCCCCCCCEEEEEEECCCCEEEEEE KAELMMPLVTAATSLSKGLTLSANDLNLTLVNSRTYRRGGYINTNDLIGSRIKRSVRAGD HHHHHHHHHHHHHHHHCCCEEECCCEEEEEECCCEECCCCCCCCHHHHHHHHHHHHHCCC VVEKNDICMVCRNDSVIIKAVKGELSILTKGTALGDAALGDNVNVQNNKSKRIINGVVTA CEECCCEEEEECCCCEEEEEECCCEEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHH VGEISIRF HEEEEEEC >Mature Secondary Structure AFYNKNMMIIKKRDNKITFYRLISFIGLFISFFNTNAHAATDEQLEAIKDSAESFLESQ EEECCCEEEEEECCCEEHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHH IEVPSNGTLSLESARIDSRIHATDCPEPLTSSLPGRLNSSGNTSVLVECIADNWKIYVPV CCCCCCCEEEEECCCCCCEEECCCCCCHHHHCCCCCCCCCCCCEEEEEEECCCCEEEEEE KAELMMPLVTAATSLSKGLTLSANDLNLTLVNSRTYRRGGYINTNDLIGSRIKRSVRAGD HHHHHHHHHHHHHHHHCCCEEECCCEEEEEECCCEECCCCCCCCHHHHHHHHHHHHHCCC VVEKNDICMVCRNDSVIIKAVKGELSILTKGTALGDAALGDNVNVQNNKSKRIINGVVTA CEECCCEEEEECCCCEEEEEECCCEEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHH VGEISIRF HEEEEEEC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA