Click here to switch to the map view.

The map label for this gene is flgF [H]

Identifier: 209695761

GI number: 209695761

Start: 2509504

End: 2510229

Strand: Reverse

Name: flgF [H]

Synonym: VSAL_I2334

Alternate gene names: 209695761

Gene position: 2510229-2509504 (Counterclockwise)

Preceding gene: 209695762

Following gene: 209695760

Centisome position: 75.49

GC content: 43.11

Gene sequence:

>726_bases
ATGAGTGGCGCTAAGCAAAACATGCAAGCTATGCAGCTTAGCTCAAACAACCTTGCCAACGTAAGTACGACTGGTTTTCG
TGCTGATTTAGAGCAAGCGCGTGCAATGCAGGCGTATGGTGAAGGTTTGCCTAGTCGCGTATTCAGCATGACTGAACGCC
CGGGACAAAATTTTGCACAAGGTTCTGTCATTACGACGGGCCGTGATTTAGATTTAACTATTGAAGGTGATGGTTGGATT
TCAGTAATGGACAACACTGGCCGTGAAGGGTTGACCCGCGCAGGTAATCTAAAAATTGATGAGACAGGTTTGCTAATGAA
TGGCAGTGGTCATTTGGTGATGGGCGAAAATAATGCGCCGATTACCTTGCCGCTTCCAATTTCAAAAATTCAAATTGCAA
AAGACGGTACGATTTCAGTATTAGAGCAAGGTGCACCAGCAGAAGCCATGGCTGAAGTCGACCGCATTAAATTAGTAAAA
ACAGATAACCGTGATTTATTCAAAGATACGAATGGTTTGTTCCGTTCTAAAAATCCTAATAATGCATTTCAAGCCGACGC
TAGCGTGACGGTGCTTAAAGGTGCATTGGAAGGCAGTAACGTAAATGCCGTAGGTGAGATGACCAATTTAATTGATTTGC
AGCGTCAGTTTGAAATGCAAGTCAAGATGATGAGTACTGCTGAAGAAATGGATAAAGCTTCAAGCTCATTATTACGTATG
GGTTAA

Upstream 100 bases:

>100_bases
CTATTGATCTATAGACCATGAAAAACTTGGCACACTCATTGCTATACTGAGTGTAGATAGATTTTTGGAGTTCATTATGG
ATCGCGCATTATTTTTAGCC

Downstream 100 bases:

>100_bases
TTGAACAATTAACTTGATTAACTTTATACATTAAAAAATTTATAGGAATACAAAATGAATCCAGCATTATGGGTAAGTAA
AACAGGTTTAGACGCACAAC

Product: flagellar basal body rod protein FlgF

Products: NA

Alternate protein names: Putative proximal rod protein [H]

Number of amino acids: Translated: 241; Mature: 240

Protein sequence:

>241_residues
MSGAKQNMQAMQLSSNNLANVSTTGFRADLEQARAMQAYGEGLPSRVFSMTERPGQNFAQGSVITTGRDLDLTIEGDGWI
SVMDNTGREGLTRAGNLKIDETGLLMNGSGHLVMGENNAPITLPLPISKIQIAKDGTISVLEQGAPAEAMAEVDRIKLVK
TDNRDLFKDTNGLFRSKNPNNAFQADASVTVLKGALEGSNVNAVGEMTNLIDLQRQFEMQVKMMSTAEEMDKASSSLLRM
G

Sequences:

>Translated_241_residues
MSGAKQNMQAMQLSSNNLANVSTTGFRADLEQARAMQAYGEGLPSRVFSMTERPGQNFAQGSVITTGRDLDLTIEGDGWI
SVMDNTGREGLTRAGNLKIDETGLLMNGSGHLVMGENNAPITLPLPISKIQIAKDGTISVLEQGAPAEAMAEVDRIKLVK
TDNRDLFKDTNGLFRSKNPNNAFQADASVTVLKGALEGSNVNAVGEMTNLIDLQRQFEMQVKMMSTAEEMDKASSSLLRM
G
>Mature_240_residues
SGAKQNMQAMQLSSNNLANVSTTGFRADLEQARAMQAYGEGLPSRVFSMTERPGQNFAQGSVITTGRDLDLTIEGDGWIS
VMDNTGREGLTRAGNLKIDETGLLMNGSGHLVMGENNAPITLPLPISKIQIAKDGTISVLEQGAPAEAMAEVDRIKLVKT
DNRDLFKDTNGLFRSKNPNNAFQADASVTVLKGALEGSNVNAVGEMTNLIDLQRQFEMQVKMMSTAEEMDKASSSLLRMG

Specific function: Unknown

COG id: COG4787

COG function: function code N; Flagellar basal body rod protein

Gene ontology:

Cell location: Bacterial flagellum basal body [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the flagella basal body rod proteins family [H]

Homologues:

Organism=Escherichia coli, GI1787317, Length=245, Percent_Identity=40, Blast_Score=167, Evalue=6e-43,
Organism=Escherichia coli, GI1787318, Length=244, Percent_Identity=30.7377049180328, Blast_Score=82, Evalue=2e-17,

Paralogues:

None

Copy number: 10-20 (rich media) [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010930
- InterPro:   IPR001444
- InterPro:   IPR019776
- InterPro:   IPR020013
- InterPro:   IPR012836 [H]

Pfam domain/function: PF06429 DUF1078; PF00460 Flg_bb_rod [H]

EC number: NA

Molecular weight: Translated: 25932; Mature: 25801

Theoretical pI: Translated: 4.70; Mature: 4.70

Prosite motif: PS00588 FLAGELLA_BB_ROD

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
6.2 %Met     (Translated Protein)
6.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
5.8 %Met     (Mature Protein)
5.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSGAKQNMQAMQLSSNNLANVSTTGFRADLEQARAMQAYGEGLPSRVFSMTERPGQNFAQ
CCCCHHHHHHEEECCCCCCEEECCCCHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCCCCC
GSVITTGRDLDLTIEGDGWISVMDNTGREGLTRAGNLKIDETGLLMNGSGHLVMGENNAP
CCEEECCCCEEEEEECCCEEEEECCCCCCCCCCCCCEEECCCCEEECCCCCEEECCCCCC
ITLPLPISKIQIAKDGTISVLEQGAPAEAMAEVDRIKLVKTDNRDLFKDTNGLFRSKNPN
EEEECCCCEEEEECCCCEEEEECCCCHHHHHHHHHEEEEECCCCHHHHCCCCCCCCCCCC
NAFQADASVTVLKGALEGSNVNAVGEMTNLIDLQRQFEMQVKMMSTAEEMDKASSSLLRM
CCEECCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
G
C
>Mature Secondary Structure 
SGAKQNMQAMQLSSNNLANVSTTGFRADLEQARAMQAYGEGLPSRVFSMTERPGQNFAQ
CCCHHHHHHEEECCCCCCEEECCCCHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCCCCC
GSVITTGRDLDLTIEGDGWISVMDNTGREGLTRAGNLKIDETGLLMNGSGHLVMGENNAP
CCEEECCCCEEEEEECCCEEEEECCCCCCCCCCCCCEEECCCCEEECCCCCEEECCCCCC
ITLPLPISKIQIAKDGTISVLEQGAPAEAMAEVDRIKLVKTDNRDLFKDTNGLFRSKNPN
EEEECCCCEEEEECCCCEEEEECCCCHHHHHHHHHEEEEECCCCHHHHCCCCCCCCCCCC
NAFQADASVTVLKGALEGSNVNAVGEMTNLIDLQRQFEMQVKMMSTAEEMDKASSSLLRM
CCEECCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
G
C

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503 [H]