| Definition | Aliivibrio salmonicida LFI1238 chromosome 1, complete genome. |
|---|---|
| Accession | NC_011312 |
| Length | 3,325,165 |
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The map label for this gene is 209695716
Identifier: 209695716
GI number: 209695716
Start: 2456845
End: 2457936
Strand: Reverse
Name: 209695716
Synonym: VSAL_I2284
Alternate gene names: NA
Gene position: 2457936-2456845 (Counterclockwise)
Preceding gene: 209695717
Following gene: 209695715
Centisome position: 73.92
GC content: 39.19
Gene sequence:
>1092_bases ATGACGAGTTTCAAACCATTGACCAGTGAAGAAGCACTCGAAGATTACTTTTCAGCATTATTAAATGAAGAGGTTATTGA GCTTGAAGATGATCAAGATATTGAGATCATTTTGCCAGAGCCAGAGCCAGAGCCAGAGCCAGAGCCAGAGCCAGAGCCAG AGCCAGAGCCAGAAATTACATGGACATCTGAAACGGTAATGGTAGAAGATCAGGTTACTTCTCACTATCAACCACAATTA GCACAACACATTGATGATGACGATGAATACCCATTTGAGCTGCCTCAATTGGAGGATGTTCAACGATTATTAAGTCAATT AGAGAATTCACAACTTGAAGCTCAGGTTGAAATTGATTCATTAATTACTGATGAATTCGTAAAACAAGAAAAAGAAGATC TCGCTGTTGAAACGACAATAGTGTCTCAAGATGTGGTTAATGACATTGAGAGTGAAGAATCGAAAGAAGAACTGGATCTT TCTGATTGGGATATTTCAGATAAAATTGTTACTAAAAAACCAGAAGAAATAAAAGAATTCGATTCGATTTCTGAAGAACC TGCAATTGATTCAGAGATAGAATTAGAGACTCAAACAGGAAAATCACCTCCTTTGAGTGGATTAGATTGGAAGAACTCAG AATTAGATGAAGAGTTCCAAGTCTTATTTTTTGAAGTGATGGGCGTTACTTTTGCTGTGCCATTGGCTCAATTAGGTGGC ATACATCAGATCACGGAATTGAATCATTTAATTGGTCGTCCTGATTGGTATCTTGGGTTACAAAATAATCGAGAAACCAC CATTGATGCGTTAGATACCGCGAAATGGGTGATGCCACAAAGCATCAAAAATGAGAGCTACAAAGAGAATTACCAATACC TTGTTATGCTTGGTGATAGCAAATGGGGATTAGCGTGTAATGCGTTAGCCGGAACAGAAACATTAACCAGTGATCGAATT CGTTGGCGTGAAACCGCAGGAAAACGTCCGTGGTTGTCTGGAATGGTAAAAGAGAAAATGTGTGCCTTGATTCACGTTGA GGCAATGATTACGATGCTTAATGCCGGTCTCGACATTAAGGGAATAGAGTAA
Upstream 100 bases:
>100_bases ATGCAAGTCTAAAAAGAATGCCACCGTCTTTTGTTTCTCCAAACAGCCGTGGTGTTTTTGCCTATAAAACGTTGTTGAAC TACTTGGAGCGATTAGTTTA
Downstream 100 bases:
>100_bases GATAACTCTAAGAGGACGAGGAAATACAATGTCTCAGTATAATCAAGTAGAGATCCGTAAAGATAAAGTAAACGATGAAG TACTACAATGGGTAACTTTT
Product: cheW-like protein
Products: NA
Alternate protein names: CheW Domain-Containing Protein; CheW-Like Protein; CheW Domain Protein; CheW-Like Domain-Containing Protein; Chemotaxis Coupling Protein; Chemotaxis-Like Protein; Flagellar Hook-Basal Body Complex Protein FliE
Number of amino acids: Translated: 363; Mature: 362
Protein sequence:
>363_residues MTSFKPLTSEEALEDYFSALLNEEVIELEDDQDIEIILPEPEPEPEPEPEPEPEPEPEITWTSETVMVEDQVTSHYQPQL AQHIDDDDEYPFELPQLEDVQRLLSQLENSQLEAQVEIDSLITDEFVKQEKEDLAVETTIVSQDVVNDIESEESKEELDL SDWDISDKIVTKKPEEIKEFDSISEEPAIDSEIELETQTGKSPPLSGLDWKNSELDEEFQVLFFEVMGVTFAVPLAQLGG IHQITELNHLIGRPDWYLGLQNNRETTIDALDTAKWVMPQSIKNESYKENYQYLVMLGDSKWGLACNALAGTETLTSDRI RWRETAGKRPWLSGMVKEKMCALIHVEAMITMLNAGLDIKGIE
Sequences:
>Translated_363_residues MTSFKPLTSEEALEDYFSALLNEEVIELEDDQDIEIILPEPEPEPEPEPEPEPEPEPEITWTSETVMVEDQVTSHYQPQL AQHIDDDDEYPFELPQLEDVQRLLSQLENSQLEAQVEIDSLITDEFVKQEKEDLAVETTIVSQDVVNDIESEESKEELDL SDWDISDKIVTKKPEEIKEFDSISEEPAIDSEIELETQTGKSPPLSGLDWKNSELDEEFQVLFFEVMGVTFAVPLAQLGG IHQITELNHLIGRPDWYLGLQNNRETTIDALDTAKWVMPQSIKNESYKENYQYLVMLGDSKWGLACNALAGTETLTSDRI RWRETAGKRPWLSGMVKEKMCALIHVEAMITMLNAGLDIKGIE >Mature_362_residues TSFKPLTSEEALEDYFSALLNEEVIELEDDQDIEIILPEPEPEPEPEPEPEPEPEPEITWTSETVMVEDQVTSHYQPQLA QHIDDDDEYPFELPQLEDVQRLLSQLENSQLEAQVEIDSLITDEFVKQEKEDLAVETTIVSQDVVNDIESEESKEELDLS DWDISDKIVTKKPEEIKEFDSISEEPAIDSEIELETQTGKSPPLSGLDWKNSELDEEFQVLFFEVMGVTFAVPLAQLGGI HQITELNHLIGRPDWYLGLQNNRETTIDALDTAKWVMPQSIKNESYKENYQYLVMLGDSKWGLACNALAGTETLTSDRIR WRETAGKRPWLSGMVKEKMCALIHVEAMITMLNAGLDIKGIE
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 41388; Mature: 41257
Theoretical pI: Translated: 3.77; Mature: 3.77
Prosite motif: PS50851 CHEW
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 2.5 %Met (Translated Protein) 3.0 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 2.2 %Met (Mature Protein) 2.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTSFKPLTSEEALEDYFSALLNEEVIELEDDQDIEIILPEPEPEPEPEPEPEPEPEPEIT CCCCCCCCHHHHHHHHHHHHHCCCCEEECCCCCEEEECCCCCCCCCCCCCCCCCCCCCEE WTSETVMVEDQVTSHYQPQLAQHIDDDDEYPFELPQLEDVQRLLSQLENSQLEAQVEIDS ECCCEEEEECHHHHCCCHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHCCCCCEEEEHHHH LITDEFVKQEKEDLAVETTIVSQDVVNDIESEESKEELDLSDWDISDKIVTKKPEEIKEF HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHCCCHHHHHHH DSISEEPAIDSEIELETQTGKSPPLSGLDWKNSELDEEFQVLFFEVMGVTFAVPLAQLGG HCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCC IHQITELNHLIGRPDWYLGLQNNRETTIDALDTAKWVMPQSIKNESYKENYQYLVMLGDS HHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHCCHHHCCCCCCCCCEEEEEECCC KWGLACNALAGTETLTSDRIRWRETAGKRPWLSGMVKEKMCALIHVEAMITMLNAGLDIK CCCEEEECCCCCCHHHHCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEE GIE CCC >Mature Secondary Structure TSFKPLTSEEALEDYFSALLNEEVIELEDDQDIEIILPEPEPEPEPEPEPEPEPEPEIT CCCCCCCHHHHHHHHHHHHHCCCCEEECCCCCEEEECCCCCCCCCCCCCCCCCCCCCEE WTSETVMVEDQVTSHYQPQLAQHIDDDDEYPFELPQLEDVQRLLSQLENSQLEAQVEIDS ECCCEEEEECHHHHCCCHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHCCCCCEEEEHHHH LITDEFVKQEKEDLAVETTIVSQDVVNDIESEESKEELDLSDWDISDKIVTKKPEEIKEF HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHCCCHHHHHHH DSISEEPAIDSEIELETQTGKSPPLSGLDWKNSELDEEFQVLFFEVMGVTFAVPLAQLGG HCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCC IHQITELNHLIGRPDWYLGLQNNRETTIDALDTAKWVMPQSIKNESYKENYQYLVMLGDS HHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHCCHHHCCCCCCCCCEEEEEECCC KWGLACNALAGTETLTSDRIRWRETAGKRPWLSGMVKEKMCALIHVEAMITMLNAGLDIK CCCEEEECCCCCCHHHHCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEE GIE CCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA