| Definition | Aliivibrio salmonicida LFI1238 chromosome 1, complete genome. |
|---|---|
| Accession | NC_011312 |
| Length | 3,325,165 |
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The map label for this gene is yeaR [H]
Identifier: 209695639
GI number: 209695639
Start: 2367304
End: 2367639
Strand: Direct
Name: yeaR [H]
Synonym: VSAL_I2202
Alternate gene names: 209695639
Gene position: 2367304-2367639 (Clockwise)
Preceding gene: 209695638
Following gene: 209695640
Centisome position: 71.19
GC content: 43.15
Gene sequence:
>336_bases ATGAGTCATTTACGTATTCCAGCAAATTGGACGATTCAACGCTCAACCCCTTTCTTTACTCGTGACAATGTACCTGCGGC ATTGCTTAGCCACCACAATACTGCGGCTGATGTGTTTGGGCAGTTGTGTGTGATGGAAGGTGTCGTTACCTATTATGGTT TTGCAGATGAAGAGGCAATAGAGCCTGAAGTTAAAGTGGTCATTAACGCGGGCGAGTTTGCGACAAGCCCTCCTCAGTAT TGGCACCGAGTTGAGTTAAGTGAGGATGCTCAATTCAATATTAATTTCTGGTCAGATCAAGACAAAACTGGAAAGAAAAT GTTCAACACTAAATAA
Upstream 100 bases:
>100_bases TAGGGTTTCAAAAACATCTTCGTAAGAAATCAGGGCAGTTTAGCTCTGAGAATTATTGGTAATTACACATAGAAGTATTA CATTTATTTGGAGAGTTATT
Downstream 100 bases:
>100_bases TTGTCACTCTTCTTTTCATTTATGGCATAGTAAGCGAAATTATAGAATGAGCAGAACAAATGACAGATCAACAAGACGAT TTCATGACGGAAGAAACTTT
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 111; Mature: 110
Protein sequence:
>111_residues MSHLRIPANWTIQRSTPFFTRDNVPAALLSHHNTAADVFGQLCVMEGVVTYYGFADEEAIEPEVKVVINAGEFATSPPQY WHRVELSEDAQFNINFWSDQDKTGKKMFNTK
Sequences:
>Translated_111_residues MSHLRIPANWTIQRSTPFFTRDNVPAALLSHHNTAADVFGQLCVMEGVVTYYGFADEEAIEPEVKVVINAGEFATSPPQY WHRVELSEDAQFNINFWSDQDKTGKKMFNTK >Mature_110_residues SHLRIPANWTIQRSTPFFTRDNVPAALLSHHNTAADVFGQLCVMEGVVTYYGFADEEAIEPEVKVVINAGEFATSPPQYW HRVELSEDAQFNINFWSDQDKTGKKMFNTK
Specific function: Unknown
COG id: COG3615
COG function: function code P; Uncharacterized protein/domain, possibly involved in tellurite resistance
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
Organism=Escherichia coli, GI1788098, Length=98, Percent_Identity=41.8367346938776, Blast_Score=87, Evalue=2e-19,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR015392 - InterPro: IPR014710 - InterPro: IPR014510 [H]
Pfam domain/function: PF09313 DUF1971 [H]
EC number: NA
Molecular weight: Translated: 12651; Mature: 12520
Theoretical pI: Translated: 5.09; Mature: 5.09
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 2.7 %Met (Translated Protein) 3.6 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 1.8 %Met (Mature Protein) 2.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSHLRIPANWTIQRSTPFFTRDNVPAALLSHHNTAADVFGQLCVMEGVVTYYGFADEEAI CCCCCCCCCEEEECCCCCEECCCCCHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCCCC EPEVKVVINAGEFATSPPQYWHRVELSEDAQFNINFWSDQDKTGKKMFNTK CCEEEEEEECCCCCCCCHHHEEEEECCCCCEEEEEEECCCCCCCCCCCCCC >Mature Secondary Structure SHLRIPANWTIQRSTPFFTRDNVPAALLSHHNTAADVFGQLCVMEGVVTYYGFADEEAI CCCCCCCCEEEECCCCCEECCCCCHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCCCC EPEVKVVINAGEFATSPPQYWHRVELSEDAQFNINFWSDQDKTGKKMFNTK CCEEEEEEECCCCCCCCHHHEEEEECCCCCEEEEEEECCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 11206551; 11258796 [H]