| Definition | Aliivibrio salmonicida LFI1238 chromosome 1, complete genome. |
|---|---|
| Accession | NC_011312 |
| Length | 3,325,165 |
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The map label for this gene is yflP [H]
Identifier: 209695629
GI number: 209695629
Start: 2354605
End: 2355591
Strand: Reverse
Name: yflP [H]
Synonym: VSAL_I2192
Alternate gene names: 209695629
Gene position: 2355591-2354605 (Counterclockwise)
Preceding gene: 209695630
Following gene: 209695628
Centisome position: 70.84
GC content: 45.19
Gene sequence:
>987_bases ATGCTATTCATGCTTACTTCATTTAAAAAACAGATCTCAGCTTCCATTATTGCCGCCACGTTTGCTCTTTCAGGATCTGC ATTTGCAGCAGACCTTGAAAAAATACACTTTATTATTCCTGGTGGTGCCGGAGGCGGTTGGGATATGACCGCTCGTGGTA CGGGTGATGTACTATTAAAATCAAACCTGATTGAGCAGGCCTCTTATCAAAACCTTTCTGGCGGTGGCGGTGGTAAAGCC ATTGCTCACCTTATCGAGACGGCCAATCGTCAAACAGACACCTTAATGGTGAACTCAACGCCTATCGTGATCCGATCGTT AAGTGGTATTTTCCCACAATCATTCCGAGATCTCACGCCGATTGCCGCCACTATCGCCGATTACGGTGCTATCGTGGTAA ATAAAGAGTCAAAATACACCAGTTGGGATCAAGTCGTTGCTGATTTTAAGACAGACCCTCGCTCAGTAAAAATTGCAGGC GGTTCAGCTCGCGGCAGTATGGATCATCTTGTCATAGCGGCCGCATTTAAAGGGGAAGGGTTTGATCCAAGAAAGGTACG CTACATCGCTTATGATGCCGGCGGAAAAGCCATGGCCGCTCTACTTTCTGGCGAAACGCCTCTTCTATCAACGGGTTTAG GTGAAGTTCTAGAAATGTCGAAAAGCGGTCAAGTCCGTATTCTTGCGATTACCGCCCCTAAACGTTTAGAAAGCGCACCA AACATTCCAACACTGACCGAATACGGTAATGATACGGTTTTTGCTAACTGGCGTGGCTTCTTTGCCGCACCCGGCACACC TCAAGCAAAAATTGATGAATATACCGAAGTCTTTAGCAAGATGTATGAAACAGAACAATGGGCCGTTGTTAGAGATCGTA ATGGTTGGATTGATAACTTCAAAGCAGATAAAGAATTCTATGCCTTTCTTGAGAACCAAGAAAAGATCATGGGTGACCTA ATGCCTGAACTTGGCTTTTTAAAATAA
Upstream 100 bases:
>100_bases AGAACGATGGCAACCCAAAGAGGTTGCAATACCAATCAGGATAAAAAGTTAAACAGAGAAAACGTTTATTTGGGTTGGTA TCCATTACTATCATAAGGAC
Downstream 100 bases:
>100_bases CCTTTCAGTGGCCTTGGACAGTTAATGACTCCCCCGGATATGGCTCATTAATCCTGCTTGTAACCTAGGAGTTTTACCCT ATAAGAGGTTCCTTGCTCTG
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 328; Mature: 328
Protein sequence:
>328_residues MLFMLTSFKKQISASIIAATFALSGSAFAADLEKIHFIIPGGAGGGWDMTARGTGDVLLKSNLIEQASYQNLSGGGGGKA IAHLIETANRQTDTLMVNSTPIVIRSLSGIFPQSFRDLTPIAATIADYGAIVVNKESKYTSWDQVVADFKTDPRSVKIAG GSARGSMDHLVIAAAFKGEGFDPRKVRYIAYDAGGKAMAALLSGETPLLSTGLGEVLEMSKSGQVRILAITAPKRLESAP NIPTLTEYGNDTVFANWRGFFAAPGTPQAKIDEYTEVFSKMYETEQWAVVRDRNGWIDNFKADKEFYAFLENQEKIMGDL MPELGFLK
Sequences:
>Translated_328_residues MLFMLTSFKKQISASIIAATFALSGSAFAADLEKIHFIIPGGAGGGWDMTARGTGDVLLKSNLIEQASYQNLSGGGGGKA IAHLIETANRQTDTLMVNSTPIVIRSLSGIFPQSFRDLTPIAATIADYGAIVVNKESKYTSWDQVVADFKTDPRSVKIAG GSARGSMDHLVIAAAFKGEGFDPRKVRYIAYDAGGKAMAALLSGETPLLSTGLGEVLEMSKSGQVRILAITAPKRLESAP NIPTLTEYGNDTVFANWRGFFAAPGTPQAKIDEYTEVFSKMYETEQWAVVRDRNGWIDNFKADKEFYAFLENQEKIMGDL MPELGFLK >Mature_328_residues MLFMLTSFKKQISASIIAATFALSGSAFAADLEKIHFIIPGGAGGGWDMTARGTGDVLLKSNLIEQASYQNLSGGGGGKA IAHLIETANRQTDTLMVNSTPIVIRSLSGIFPQSFRDLTPIAATIADYGAIVVNKESKYTSWDQVVADFKTDPRSVKIAG GSARGSMDHLVIAAAFKGEGFDPRKVRYIAYDAGGKAMAALLSGETPLLSTGLGEVLEMSKSGQVRILAITAPKRLESAP NIPTLTEYGNDTVFANWRGFFAAPGTPQAKIDEYTEVFSKMYETEQWAVVRDRNGWIDNFKADKEFYAFLENQEKIMGDL MPELGFLK
Specific function: Unknown
COG id: COG3181
COG function: function code S; Uncharacterized protein conserved in bacteria
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the UPF0065 (bug) family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR005064 [H]
Pfam domain/function: PF03401 Bug [H]
EC number: NA
Molecular weight: Translated: 35476; Mature: 35476
Theoretical pI: Translated: 5.84; Mature: 5.84
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 3.0 %Met (Translated Protein) 3.0 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 3.0 %Met (Mature Protein) 3.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLFMLTSFKKQISASIIAATFALSGSAFAADLEKIHFIIPGGAGGGWDMTARGTGDVLLK CEEEEHHHHHHHHHHHHHHHHHCCCCHHHCCCEEEEEEEECCCCCCCCEECCCCCCEEEH SNLIEQASYQNLSGGGGGKAIAHLIETANRQTDTLMVNSTPIVIRSLSGIFPQSFRDLTP HHHHHHHCCCCCCCCCCHHHHHHHHHHCCCCCCEEEECCCCEEEEHHHCCCCHHHHHHHH IAATIADYGAIVVNKESKYTSWDQVVADFKTDPRSVKIAGGSARGSMDHLVIAAAFKGEG HHHHHHHCCEEEEECCCCCCCHHHHHHHCCCCCCEEEEECCCCCCCCCEEEEEEEECCCC FDPRKVRYIAYDAGGKAMAALLSGETPLLSTGLGEVLEMSKSGQVRILAITAPKRLESAP CCCCEEEEEEEECCCHHHHHHHCCCCCCHHCCHHHHHHHCCCCCEEEEEEECCHHHCCCC NIPTLTEYGNDTVFANWRGFFAAPGTPQAKIDEYTEVFSKMYETEQWAVVRDRNGWIDNF CCCCHHHCCCCEEEEECCEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCC KADKEFYAFLENQEKIMGDLMPELGFLK CCCHHHHHHHHHHHHHHHHHHHHCCCCC >Mature Secondary Structure MLFMLTSFKKQISASIIAATFALSGSAFAADLEKIHFIIPGGAGGGWDMTARGTGDVLLK CEEEEHHHHHHHHHHHHHHHHHCCCCHHHCCCEEEEEEEECCCCCCCCEECCCCCCEEEH SNLIEQASYQNLSGGGGGKAIAHLIETANRQTDTLMVNSTPIVIRSLSGIFPQSFRDLTP HHHHHHHCCCCCCCCCCHHHHHHHHHHCCCCCCEEEECCCCEEEEHHHCCCCHHHHHHHH IAATIADYGAIVVNKESKYTSWDQVVADFKTDPRSVKIAGGSARGSMDHLVIAAAFKGEG HHHHHHHCCEEEEECCCCCCCHHHHHHHCCCCCCEEEEECCCCCCCCCEEEEEEEECCCC FDPRKVRYIAYDAGGKAMAALLSGETPLLSTGLGEVLEMSKSGQVRILAITAPKRLESAP CCCCEEEEEEEECCCHHHHHHHCCCCCCHHCCHHHHHHHCCCCCEEEEEEECCHHHCCCC NIPTLTEYGNDTVFANWRGFFAAPGTPQAKIDEYTEVFSKMYETEQWAVVRDRNGWIDNF CCCCHHHCCCCEEEEECCEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCC KADKEFYAFLENQEKIMGDLMPELGFLK CCCHHHHHHHHHHHHHHHHHHHHCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 9272861; 9384377 [H]