| Definition | Aliivibrio salmonicida LFI1238 chromosome 1, complete genome. |
|---|---|
| Accession | NC_011312 |
| Length | 3,325,165 |
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The map label for this gene is yfbV [C]
Identifier: 209695555
GI number: 209695555
Start: 2260574
End: 2261023
Strand: Reverse
Name: yfbV [C]
Synonym: VSAL_I2111
Alternate gene names: 209695555
Gene position: 2261023-2260574 (Counterclockwise)
Preceding gene: 209695558
Following gene: 209695553
Centisome position: 68.0
GC content: 39.11
Gene sequence:
>450_bases ATGAGTGATAACGGCTTTTTATTCCGATTCAAAGATGGTCAGACGTATATGGATACGTGGCCTGAACGTAAAGAGTTAGC ACCGATGTTCCCTGAACAGCGAGTGATTAAGGCAACTAAATTTGCTGTTAAAGTGATGCCAGCAGTCGCTGTGATCAGCG TATTGACTCAAATGGTGTTTAATAATTCAGCGGCGTTACCACAATCCATCATTATTGCACTCTTTGCTATTAGTATGCCT TTGCAAGGATTTTGGTGGTTAGGTAATCGAGCGAATACTAAATTGCCACCAGCATTAGTAAATTGGTACAGAGAGCTTTA TCAAAAAATTATCGAATCCGGGGCGGCATTAGAGCCACTTAAACAGAGACCTCGATATAAAGATCTTGCGAATATTTTGA ATAAAGCGTTTAAACAACTAGATAAAACAGCATTAGAACGTTGGTTTTAA
Upstream 100 bases:
>100_bases AAGATAACAAAAATATTTTAAGATAATATTAATTCTAATCAAGTTTATTCTGTATTTTTTTGAATGATTAAACTTTTGTT TAGTTATCGGAGGGGGCAAA
Downstream 100 bases:
>100_bases TACTTTATTACAATAAATCTAGAAATAAAAAAAGGAGCTAATTAGCTCCTTTTTTTGATCTTATGGTTTAGATAGAGATT ACATACGCTCTAGCGTTTCA
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 149; Mature: 148
Protein sequence:
>149_residues MSDNGFLFRFKDGQTYMDTWPERKELAPMFPEQRVIKATKFAVKVMPAVAVISVLTQMVFNNSAALPQSIIIALFAISMP LQGFWWLGNRANTKLPPALVNWYRELYQKIIESGAALEPLKQRPRYKDLANILNKAFKQLDKTALERWF
Sequences:
>Translated_149_residues MSDNGFLFRFKDGQTYMDTWPERKELAPMFPEQRVIKATKFAVKVMPAVAVISVLTQMVFNNSAALPQSIIIALFAISMP LQGFWWLGNRANTKLPPALVNWYRELYQKIIESGAALEPLKQRPRYKDLANILNKAFKQLDKTALERWF >Mature_148_residues SDNGFLFRFKDGQTYMDTWPERKELAPMFPEQRVIKATKFAVKVMPAVAVISVLTQMVFNNSAALPQSIIIALFAISMPL QGFWWLGNRANTKLPPALVNWYRELYQKIIESGAALEPLKQRPRYKDLANILNKAFKQLDKTALERWF
Specific function: Unknown
COG id: COG3092
COG function: function code S; Uncharacterized protein conserved in bacteria
Gene ontology:
Cell location: Cell inner membrane; Multi-pass membrane protein
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the UPF0208 family
Homologues:
Organism=Escherichia coli, GI1788632, Length=141, Percent_Identity=47.5177304964539, Blast_Score=139, Evalue=5e-35,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): Y2111_ALISL (B6EI58)
Other databases:
- EMBL: FM178379 - RefSeq: YP_002263484.1 - GeneID: 6988257 - GenomeReviews: FM178379_GR - KEGG: vsa:VSAL_I2111 - HOGENOM: HBG297010 - OMA: FACSLPM - ProtClustDB: PRK01816 - HAMAP: MF_01101 - InterPro: IPR007334
Pfam domain/function: PF04217 DUF412
EC number: NA
Molecular weight: Translated: 17210; Mature: 17079
Theoretical pI: Translated: 10.51; Mature: 10.51
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
HASH(0x20cdbdfc)-; HASH(0x21ac1e48)-;
Cys/Met content:
0.0 %Cys (Translated Protein) 4.0 %Met (Translated Protein) 4.0 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 3.4 %Met (Mature Protein) 3.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSDNGFLFRFKDGQTYMDTWPERKELAPMFPEQRVIKATKFAVKVMPAVAVISVLTQMVF CCCCCCEEEECCCCCHHHCCCCHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH NNSAALPQSIIIALFAISMPLQGFWWLGNRANTKLPPALVNWYRELYQKIIESGAALEPL CCCCCCHHHHHHHHHHHHCCCCCEEECCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCHH KQRPRYKDLANILNKAFKQLDKTALERWF HHCCCHHHHHHHHHHHHHHHHHHHHHHCH >Mature Secondary Structure SDNGFLFRFKDGQTYMDTWPERKELAPMFPEQRVIKATKFAVKVMPAVAVISVLTQMVF CCCCCEEEECCCCCHHHCCCCHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH NNSAALPQSIIIALFAISMPLQGFWWLGNRANTKLPPALVNWYRELYQKIIESGAALEPL CCCCCCHHHHHHHHHHHHCCCCCEEECCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCHH KQRPRYKDLANILNKAFKQLDKTALERWF HHCCCHHHHHHHHHHHHHHHHHHHHHHCH
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: NA