Definition Aliivibrio salmonicida LFI1238 chromosome 1, complete genome.
Accession NC_011312
Length 3,325,165

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The map label for this gene is yfbV [C]

Identifier: 209695555

GI number: 209695555

Start: 2260574

End: 2261023

Strand: Reverse

Name: yfbV [C]

Synonym: VSAL_I2111

Alternate gene names: 209695555

Gene position: 2261023-2260574 (Counterclockwise)

Preceding gene: 209695558

Following gene: 209695553

Centisome position: 68.0

GC content: 39.11

Gene sequence:

>450_bases
ATGAGTGATAACGGCTTTTTATTCCGATTCAAAGATGGTCAGACGTATATGGATACGTGGCCTGAACGTAAAGAGTTAGC
ACCGATGTTCCCTGAACAGCGAGTGATTAAGGCAACTAAATTTGCTGTTAAAGTGATGCCAGCAGTCGCTGTGATCAGCG
TATTGACTCAAATGGTGTTTAATAATTCAGCGGCGTTACCACAATCCATCATTATTGCACTCTTTGCTATTAGTATGCCT
TTGCAAGGATTTTGGTGGTTAGGTAATCGAGCGAATACTAAATTGCCACCAGCATTAGTAAATTGGTACAGAGAGCTTTA
TCAAAAAATTATCGAATCCGGGGCGGCATTAGAGCCACTTAAACAGAGACCTCGATATAAAGATCTTGCGAATATTTTGA
ATAAAGCGTTTAAACAACTAGATAAAACAGCATTAGAACGTTGGTTTTAA

Upstream 100 bases:

>100_bases
AAGATAACAAAAATATTTTAAGATAATATTAATTCTAATCAAGTTTATTCTGTATTTTTTTGAATGATTAAACTTTTGTT
TAGTTATCGGAGGGGGCAAA

Downstream 100 bases:

>100_bases
TACTTTATTACAATAAATCTAGAAATAAAAAAAGGAGCTAATTAGCTCCTTTTTTTGATCTTATGGTTTAGATAGAGATT
ACATACGCTCTAGCGTTTCA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 149; Mature: 148

Protein sequence:

>149_residues
MSDNGFLFRFKDGQTYMDTWPERKELAPMFPEQRVIKATKFAVKVMPAVAVISVLTQMVFNNSAALPQSIIIALFAISMP
LQGFWWLGNRANTKLPPALVNWYRELYQKIIESGAALEPLKQRPRYKDLANILNKAFKQLDKTALERWF

Sequences:

>Translated_149_residues
MSDNGFLFRFKDGQTYMDTWPERKELAPMFPEQRVIKATKFAVKVMPAVAVISVLTQMVFNNSAALPQSIIIALFAISMP
LQGFWWLGNRANTKLPPALVNWYRELYQKIIESGAALEPLKQRPRYKDLANILNKAFKQLDKTALERWF
>Mature_148_residues
SDNGFLFRFKDGQTYMDTWPERKELAPMFPEQRVIKATKFAVKVMPAVAVISVLTQMVFNNSAALPQSIIIALFAISMPL
QGFWWLGNRANTKLPPALVNWYRELYQKIIESGAALEPLKQRPRYKDLANILNKAFKQLDKTALERWF

Specific function: Unknown

COG id: COG3092

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0208 family

Homologues:

Organism=Escherichia coli, GI1788632, Length=141, Percent_Identity=47.5177304964539, Blast_Score=139, Evalue=5e-35,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): Y2111_ALISL (B6EI58)

Other databases:

- EMBL:   FM178379
- RefSeq:   YP_002263484.1
- GeneID:   6988257
- GenomeReviews:   FM178379_GR
- KEGG:   vsa:VSAL_I2111
- HOGENOM:   HBG297010
- OMA:   FACSLPM
- ProtClustDB:   PRK01816
- HAMAP:   MF_01101
- InterPro:   IPR007334

Pfam domain/function: PF04217 DUF412

EC number: NA

Molecular weight: Translated: 17210; Mature: 17079

Theoretical pI: Translated: 10.51; Mature: 10.51

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

HASH(0x20cdbdfc)-; HASH(0x21ac1e48)-;

Cys/Met content:

0.0 %Cys     (Translated Protein)
4.0 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSDNGFLFRFKDGQTYMDTWPERKELAPMFPEQRVIKATKFAVKVMPAVAVISVLTQMVF
CCCCCCEEEECCCCCHHHCCCCHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
NNSAALPQSIIIALFAISMPLQGFWWLGNRANTKLPPALVNWYRELYQKIIESGAALEPL
CCCCCCHHHHHHHHHHHHCCCCCEEECCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCHH
KQRPRYKDLANILNKAFKQLDKTALERWF
HHCCCHHHHHHHHHHHHHHHHHHHHHHCH
>Mature Secondary Structure 
SDNGFLFRFKDGQTYMDTWPERKELAPMFPEQRVIKATKFAVKVMPAVAVISVLTQMVF
CCCCCEEEECCCCCHHHCCCCHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
NNSAALPQSIIIALFAISMPLQGFWWLGNRANTKLPPALVNWYRELYQKIIESGAALEPL
CCCCCCHHHHHHHHHHHHCCCCCEEECCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCHH
KQRPRYKDLANILNKAFKQLDKTALERWF
HHCCCHHHHHHHHHHHHHHHHHHHHHHCH

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA