| Definition | Aliivibrio salmonicida LFI1238 chromosome 1, complete genome. |
|---|---|
| Accession | NC_011312 |
| Length | 3,325,165 |
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The map label for this gene is 209695549
Identifier: 209695549
GI number: 209695549
Start: 2253965
End: 2254696
Strand: Reverse
Name: 209695549
Synonym: VSAL_I2105
Alternate gene names: NA
Gene position: 2254696-2253965 (Counterclockwise)
Preceding gene: 209695553
Following gene: 209695548
Centisome position: 67.81
GC content: 39.75
Gene sequence:
>732_bases ATGGGCATCATGGCATACGCAAATTTTAATATAATCGATTGGCACGCAATTTCGACTGGATTAGGAAATCGAAGTGATTG GCTTCTATGGTCAGAAAGTGATTTTACTTGGCCAGAAGACGGTAAAATACCGGTTGATAAAATTCCTGCGATGGCTCGAC GTCGAATGAGTTCATTGAGTAAATTAGCGGTTCAAACTGCCTTAACGTTCTCTGAACATAATTCGATAGATTATTTGGTT TTTGCAAGCCGCCATGGTGAATTAACCAGAACCACGACATTACTTGAAGACATTTTAAAAGGAGAAGATGCCTCTCCAAT GGCGTTCTCTCAATCGGTTCATAATACGGCCTCTGGTTTATTTACGATCAGTGCCAAAAAACCAATTCCGGTGACCTCTA TTGCCGCCGGAGAAAATACCTTTCACTCTGCATTAGTTGAAGCCGCTGCCTATCTTTATGAAAATCCAGACCATAATGTA TTAGTGGTGGATTTTGATGAACCGACGTCTTCCCATTATAAAGAATTTGAAACTGACACTTATCAAGGCTACGCATTAGG ATTGATATTAAGCAGTGGACAAGATATTTCGATTGCATGGAGCAATAAACCATCAATCAGTTCTTCATCCTTGCCTCATG GGTTGCAATGTATTGCTAACTTAGTAGGATCAAAGGATAAATGGAATGTTGATAGCAAATCAACTCAATGGACATGGACT CGTATTAAGTAG
Upstream 100 bases:
>100_bases TATTTACCGTATGCTTTGCCGCTTTTGTATTTGCGCCAAGTCACTGAATTCATATATCCTATACGACTATAGTCACAAAT TGTAATGTTTTTACTATTAG
Downstream 100 bases:
>100_bases AATGACAGTACTCTCACGAATAGATAAATATTGGCGAATTATAGCGACGGGAATTTGTTTTTCGTTGTTTGGTATTGGCG CTCTTTGTTTAACTTTTGTG
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 243; Mature: 242
Protein sequence:
>243_residues MGIMAYANFNIIDWHAISTGLGNRSDWLLWSESDFTWPEDGKIPVDKIPAMARRRMSSLSKLAVQTALTFSEHNSIDYLV FASRHGELTRTTTLLEDILKGEDASPMAFSQSVHNTASGLFTISAKKPIPVTSIAAGENTFHSALVEAAAYLYENPDHNV LVVDFDEPTSSHYKEFETDTYQGYALGLILSSGQDISIAWSNKPSISSSSLPHGLQCIANLVGSKDKWNVDSKSTQWTWT RIK
Sequences:
>Translated_243_residues MGIMAYANFNIIDWHAISTGLGNRSDWLLWSESDFTWPEDGKIPVDKIPAMARRRMSSLSKLAVQTALTFSEHNSIDYLV FASRHGELTRTTTLLEDILKGEDASPMAFSQSVHNTASGLFTISAKKPIPVTSIAAGENTFHSALVEAAAYLYENPDHNV LVVDFDEPTSSHYKEFETDTYQGYALGLILSSGQDISIAWSNKPSISSSSLPHGLQCIANLVGSKDKWNVDSKSTQWTWT RIK >Mature_242_residues GIMAYANFNIIDWHAISTGLGNRSDWLLWSESDFTWPEDGKIPVDKIPAMARRRMSSLSKLAVQTALTFSEHNSIDYLVF ASRHGELTRTTTLLEDILKGEDASPMAFSQSVHNTASGLFTISAKKPIPVTSIAAGENTFHSALVEAAAYLYENPDHNVL VVDFDEPTSSHYKEFETDTYQGYALGLILSSGQDISIAWSNKPSISSSSLPHGLQCIANLVGSKDKWNVDSKSTQWTWTR IK
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 26877; Mature: 26746
Theoretical pI: Translated: 5.53; Mature: 5.53
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 2.1 %Met (Translated Protein) 2.5 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 1.7 %Met (Mature Protein) 2.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MGIMAYANFNIIDWHAISTGLGNRSDWLLWSESDFTWPEDGKIPVDKIPAMARRRMSSLS CCEEEEECCCEEEEEEEECCCCCCCCEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHH KLAVQTALTFSEHNSIDYLVFASRHGELTRTTTLLEDILKGEDASPMAFSQSVHNTASGL HHHHHHHHEECCCCCEEEEEEECCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCCE FTISAKKPIPVTSIAAGENTFHSALVEAAAYLYENPDHNVLVVDFDEPTSSHYKEFETDT EEEECCCCCCEEEEECCCHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHCCCC YQGYALGLILSSGQDISIAWSNKPSISSSSLPHGLQCIANLVGSKDKWNVDSKSTQWTWT CCCEEEEEEEECCCEEEEEECCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCEEEEE RIK EEC >Mature Secondary Structure GIMAYANFNIIDWHAISTGLGNRSDWLLWSESDFTWPEDGKIPVDKIPAMARRRMSSLS CEEEEECCCEEEEEEEECCCCCCCCEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHH KLAVQTALTFSEHNSIDYLVFASRHGELTRTTTLLEDILKGEDASPMAFSQSVHNTASGL HHHHHHHHEECCCCCEEEEEEECCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCCE FTISAKKPIPVTSIAAGENTFHSALVEAAAYLYENPDHNVLVVDFDEPTSSHYKEFETDT EEEECCCCCCEEEEECCCHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHCCCC YQGYALGLILSSGQDISIAWSNKPSISSSSLPHGLQCIANLVGSKDKWNVDSKSTQWTWT CCCEEEEEEEECCCEEEEEECCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCEEEEE RIK EEC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA