| Definition | Aliivibrio salmonicida LFI1238 chromosome 1, complete genome. |
|---|---|
| Accession | NC_011312 |
| Length | 3,325,165 |
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The map label for this gene is 209695539
Identifier: 209695539
GI number: 209695539
Start: 2246035
End: 2246655
Strand: Reverse
Name: 209695539
Synonym: VSAL_I2095
Alternate gene names: NA
Gene position: 2246655-2246035 (Counterclockwise)
Preceding gene: 209695540
Following gene: 209695538
Centisome position: 67.57
GC content: 36.39
Gene sequence:
>621_bases ATGGGTAACAGAGTGAATAGAAAAACAGCTTGGATAGCGGCATTTTTTTTATTATTTAGTGTGAATAGCTTTGCATTTAG TGTCGATGATTTACAGCAACAATTATCCCAATCAACACTGGTTCGTGGTGAGTTTAGTCAAGTCAGAACCATGCAGATGT TTAACCACCCTTTAAGTACGTCTGGCACTTTTTTGCTAGAACATGATAAAGGGTTACTCTGGCAACAAAACACACCATTT CCAATTTATTTAACGCTAACAAAGAATAAGTTACGCCAATCGATTAATGGGGAATCTCAGGTTATGAATGATTCTGAAAA CCCAATGGCGTTTTATTTTACTCGTTTATTTCTGTCCTTATTCAAAGGTGACACTAAAGCGATTCAAGAAAATTTCACCA TGACATTAACAGGCTCAAAAGAAGGGTGGATTTTATTGTTAACCCCGAAATCTGCACCGATTAACAGTGTGTTTGAAACG ATTAAAATTGAAGGCGGTGTGTATTTGAATCGTGTTGTTTTAAGAGAAGTCCGTGGTGACGTTACTGAGATGATATTTTC AAACCAATCATCAACACCTAGTGTATTAACAGAAGAAGAGTTACGTGCCTTTACTTTCTAA
Upstream 100 bases:
>100_bases ACAAAAGGACACACGATGCAAGTAGCTGTCAGTATTGAAAGCGATGAGATGTGTTTTGTTTCACCTCATGTATTTACCGA TAAAGTAGAGGCTTACCATA
Downstream 100 bases:
>100_bases TTGTATGAAATCGGCCTTAATGAAACCACGACAACTTGCTGTCGGTTGGTTATTGGTATTGAGTGTGATTACAGGGTTGT TTGGTTATCAATGGTACTCA
Product: outer membrane protein
Products: NA
Alternate protein names: Outer-Membrane Lipoprotein Carrier Protein; Signal Peptide Protein; Outer Membrane Protein; Outer Membrane Lipocarrier Protein LolA Family Protein; Outer Membrane Lipoprotein Carrier Protein; Flagellum-Specific ATP Synthase; Exported Lipoprotein; Secreted Protein
Number of amino acids: Translated: 206; Mature: 205
Protein sequence:
>206_residues MGNRVNRKTAWIAAFFLLFSVNSFAFSVDDLQQQLSQSTLVRGEFSQVRTMQMFNHPLSTSGTFLLEHDKGLLWQQNTPF PIYLTLTKNKLRQSINGESQVMNDSENPMAFYFTRLFLSLFKGDTKAIQENFTMTLTGSKEGWILLLTPKSAPINSVFET IKIEGGVYLNRVVLREVRGDVTEMIFSNQSSTPSVLTEEELRAFTF
Sequences:
>Translated_206_residues MGNRVNRKTAWIAAFFLLFSVNSFAFSVDDLQQQLSQSTLVRGEFSQVRTMQMFNHPLSTSGTFLLEHDKGLLWQQNTPF PIYLTLTKNKLRQSINGESQVMNDSENPMAFYFTRLFLSLFKGDTKAIQENFTMTLTGSKEGWILLLTPKSAPINSVFET IKIEGGVYLNRVVLREVRGDVTEMIFSNQSSTPSVLTEEELRAFTF >Mature_205_residues GNRVNRKTAWIAAFFLLFSVNSFAFSVDDLQQQLSQSTLVRGEFSQVRTMQMFNHPLSTSGTFLLEHDKGLLWQQNTPFP IYLTLTKNKLRQSINGESQVMNDSENPMAFYFTRLFLSLFKGDTKAIQENFTMTLTGSKEGWILLLTPKSAPINSVFETI KIEGGVYLNRVVLREVRGDVTEMIFSNQSSTPSVLTEEELRAFTF
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 23488; Mature: 23357
Theoretical pI: Translated: 7.69; Mature: 7.69
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 3.4 %Met (Translated Protein) 3.4 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 2.9 %Met (Mature Protein) 2.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MGNRVNRKTAWIAAFFLLFSVNSFAFSVDDLQQQLSQSTLVRGEFSQVRTMQMFNHPLST CCCCCCHHHHHHHHHHHHHHHHHHEEEHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCC SGTFLLEHDKGLLWQQNTPFPIYLTLTKNKLRQSINGESQVMNDSENPMAFYFTRLFLSL CCCEEEECCCCCEEECCCCCEEEEEEEHHHHHHHCCCCHHHCCCCCCCHHHHHHHHHHHH FKGDTKAIQENFTMTLTGSKEGWILLLTPKSAPINSVFETIKIEGGVYLNRVVLREVRGD HCCCHHHHHCCCEEEEECCCCCEEEEECCCCCCHHHHHHHHEECCCCHHHHHHHHHHHHH VTEMIFSNQSSTPSVLTEEELRAFTF HHHHHHCCCCCCCCCCCHHHHHHCCC >Mature Secondary Structure GNRVNRKTAWIAAFFLLFSVNSFAFSVDDLQQQLSQSTLVRGEFSQVRTMQMFNHPLST CCCCCHHHHHHHHHHHHHHHHHHEEEHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCC SGTFLLEHDKGLLWQQNTPFPIYLTLTKNKLRQSINGESQVMNDSENPMAFYFTRLFLSL CCCEEEECCCCCEEECCCCCEEEEEEEHHHHHHHCCCCHHHCCCCCCCHHHHHHHHHHHH FKGDTKAIQENFTMTLTGSKEGWILLLTPKSAPINSVFETIKIEGGVYLNRVVLREVRGD HCCCHHHHHCCCEEEEECCCCCEEEEECCCCCCHHHHHHHHEECCCCHHHHHHHHHHHHH VTEMIFSNQSSTPSVLTEEELRAFTF HHHHHHCCCCCCCCCCCHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA