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The map label for this gene is ymdC [H]

Identifier: 209695527

GI number: 209695527

Start: 2231708

End: 2233240

Strand: Reverse

Name: ymdC [H]

Synonym: VSAL_I2081

Alternate gene names: 209695527

Gene position: 2233240-2231708 (Counterclockwise)

Preceding gene: 209695529

Following gene: 209695525

Centisome position: 67.16

GC content: 41.81

Gene sequence:

>1533_bases
ATGTCTGTGCTTCAACGTATTCATATAACACTATTTTTTGTCGCTATTCTTTCTGGGTGTGGTTCACTTCCTGATGAGGT
TGAGCACACTAATGAACCCGTCGCAAACTCAGTCATCAGCCCATTATCGGAATTAAGAGACGCTTATCAACCGTCGACAT
CGACTCAAGAGACGAGTGCGGTTTTACCGCAAGATGCAGGCTGGGATGCTCTTGCTCAACGCTTAGCATTAATCGAAACC
GCAGAACACACGATTGATATTCAATATTACATCTGGAATTCAGACACTTCAGGTCATTACCTAGCGAGCCGTTTATTAGC
GGCGGCTGATCGCGGTGTTAAAGTACGTGTAATGTTGGATGATATCAACCTTAATGAACGAGAAGATCTCCTCATTGCGC
TTAATTCACACCCTCAAGTTGATATCCGTATATTCAATCCAATCCCAACTCGCCGTGGTGTTACCAAGTGGGTCAATTTC
TTAGGAGACTTTTCTCGTCTAAACCGTCGTATGCACAATAAATCATTTACCGTTGATGGGGCTTTCTCTGTTGTTGGTGG
ACGTAATATTGGCGATGAGTATTTTGATCTGTCTGATGACATCAATTTTCGTGACCGTGATGTATTAGTCACAGGCGATG
TGGTGGGGGAGATTCAAACGAGTTTTACAGAATATTGGGACAGTCGGTGGTCTTACCCTGTTGATTTATTAGGTGGAAAA
ACGTCACCAGATCAACCAGTGTTAGACGAAATTTCGGCACCGATTTACACAAACTACCCAGCCTTGCCAGAAGGCAGTAA
AACTGCCCATCAATTCTTAACTAAGTTAATGGGGAGCATGACGTGGGTTCAAGCCCGCTTTGTTTCTGATAGACCAGTTC
CAGTTGATAAAAATAACACGAGTGAACCAAAAGAAACGGCCAAAGTATTGGCTCAATTAGCTCGTGAATCGGATCAAGAG
ATCTTATTGGAATCGGCTTATTTGATATTTGATGATAGCCAACTAGAAGAATGGCAAGAATTAAGTAACAAGGGTGTAAA
GATAAAAGCATTAACCAATTCAATGGCATCGAATGATTTAACAACGAATCACTCTGGTTATGCAGGCCGACGCCAAGACA
TGCTTGAGCACGGTATACAATTGTTTGAATTAAAACCAGAAACAGGGTTGTGTGAAGATTCAACCCGAGATGTTTCTAAG
TGTGCCCCGACATTAGCGTATGGGCTTCATGCAAAGTCTGCTGTTTTTGATAGAAAAATCGCGAGTATCGGCTCTTTTAA
CTTCAATTTACGATCCACTTACCTTAATACTGAATCGATTCTAATCATTGAAAATCAAAAAATAGCAGAGCGTCTGGCTG
ATGACATAGAGCAAGCAATGGATGAAGAAAACAGTTGGCATTTGAAATTACAAGACGGTGACATTCGTTGGTATTCTGGC
GATAAAAGTTGGGAAAGTGAACCAGAAACAGGCCGATGGGAACGATTTGAATCCCGATTTTTGCAGTTATTGCCAATAGA
GAAGTACTTGTAG

Upstream 100 bases:

>100_bases
TTTGGATAAGAACCGAGCAGTAGAGCGTTAAGATATAAAAATAATATATAATAGACAGAATCAGGGTTGGTTATTTAGGT
TTAATAAGGAAGTTTAATAA

Downstream 100 bases:

>100_bases
TGAAGGCTTCTTATTGAGATGAATTGCATGCTGAGTTCTCATGCGGTATTACCATAAGTTATAATTCATAGTATTTTCGA
TTAGAATTGCCTCTAAATTG

Product: phospholipase D

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 510; Mature: 509

Protein sequence:

>510_residues
MSVLQRIHITLFFVAILSGCGSLPDEVEHTNEPVANSVISPLSELRDAYQPSTSTQETSAVLPQDAGWDALAQRLALIET
AEHTIDIQYYIWNSDTSGHYLASRLLAAADRGVKVRVMLDDINLNEREDLLIALNSHPQVDIRIFNPIPTRRGVTKWVNF
LGDFSRLNRRMHNKSFTVDGAFSVVGGRNIGDEYFDLSDDINFRDRDVLVTGDVVGEIQTSFTEYWDSRWSYPVDLLGGK
TSPDQPVLDEISAPIYTNYPALPEGSKTAHQFLTKLMGSMTWVQARFVSDRPVPVDKNNTSEPKETAKVLAQLARESDQE
ILLESAYLIFDDSQLEEWQELSNKGVKIKALTNSMASNDLTTNHSGYAGRRQDMLEHGIQLFELKPETGLCEDSTRDVSK
CAPTLAYGLHAKSAVFDRKIASIGSFNFNLRSTYLNTESILIIENQKIAERLADDIEQAMDEENSWHLKLQDGDIRWYSG
DKSWESEPETGRWERFESRFLQLLPIEKYL

Sequences:

>Translated_510_residues
MSVLQRIHITLFFVAILSGCGSLPDEVEHTNEPVANSVISPLSELRDAYQPSTSTQETSAVLPQDAGWDALAQRLALIET
AEHTIDIQYYIWNSDTSGHYLASRLLAAADRGVKVRVMLDDINLNEREDLLIALNSHPQVDIRIFNPIPTRRGVTKWVNF
LGDFSRLNRRMHNKSFTVDGAFSVVGGRNIGDEYFDLSDDINFRDRDVLVTGDVVGEIQTSFTEYWDSRWSYPVDLLGGK
TSPDQPVLDEISAPIYTNYPALPEGSKTAHQFLTKLMGSMTWVQARFVSDRPVPVDKNNTSEPKETAKVLAQLARESDQE
ILLESAYLIFDDSQLEEWQELSNKGVKIKALTNSMASNDLTTNHSGYAGRRQDMLEHGIQLFELKPETGLCEDSTRDVSK
CAPTLAYGLHAKSAVFDRKIASIGSFNFNLRSTYLNTESILIIENQKIAERLADDIEQAMDEENSWHLKLQDGDIRWYSG
DKSWESEPETGRWERFESRFLQLLPIEKYL
>Mature_509_residues
SVLQRIHITLFFVAILSGCGSLPDEVEHTNEPVANSVISPLSELRDAYQPSTSTQETSAVLPQDAGWDALAQRLALIETA
EHTIDIQYYIWNSDTSGHYLASRLLAAADRGVKVRVMLDDINLNEREDLLIALNSHPQVDIRIFNPIPTRRGVTKWVNFL
GDFSRLNRRMHNKSFTVDGAFSVVGGRNIGDEYFDLSDDINFRDRDVLVTGDVVGEIQTSFTEYWDSRWSYPVDLLGGKT
SPDQPVLDEISAPIYTNYPALPEGSKTAHQFLTKLMGSMTWVQARFVSDRPVPVDKNNTSEPKETAKVLAQLARESDQEI
LLESAYLIFDDSQLEEWQELSNKGVKIKALTNSMASNDLTTNHSGYAGRRQDMLEHGIQLFELKPETGLCEDSTRDVSKC
APTLAYGLHAKSAVFDRKIASIGSFNFNLRSTYLNTESILIIENQKIAERLADDIEQAMDEENSWHLKLQDGDIRWYSGD
KSWESEPETGRWERFESRFLQLLPIEKYL

Specific function: Unknown

COG id: COG1502

COG function: function code I; Phosphatidylserine/phosphatidylglycerophosphate/cardiolipin synthases and related enzymes

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 PLD phosphodiesterase domains [H]

Homologues:

Organism=Escherichia coli, GI87081826, Length=489, Percent_Identity=36.1963190184049, Blast_Score=266, Evalue=2e-72,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001736 [H]

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 57695; Mature: 57564

Theoretical pI: Translated: 4.56; Mature: 4.56

Prosite motif: PS00013 PROKAR_LIPOPROTEIN ; PS50035 PLD

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSVLQRIHITLFFVAILSGCGSLPDEVEHTNEPVANSVISPLSELRDAYQPSTSTQETSA
CCHHHHHHHHHHHHHHHHHCCCCCHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHC
VLPQDAGWDALAQRLALIETAEHTIDIQYYIWNSDTSGHYLASRLLAAADRGVKVRVMLD
CCCCCCCHHHHHHHHHHHHHHCCEEEEEEEEECCCCCHHHHHHHHHHHHCCCEEEEEEEE
DINLNEREDLLIALNSHPQVDIRIFNPIPTRRGVTKWVNFLGDFSRLNRRMHNKSFTVDG
CCCCCCCCCEEEEECCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHCCCCEEECC
AFSVVGGRNIGDEYFDLSDDINFRDRDVLVTGDVVGEIQTSFTEYWDSRWSYPVDLLGGK
CEEEECCCCCCHHHCCCCCCCCCCCCEEEEECHHHHHHHHHHHHHHHCCCCCCHHCCCCC
TSPDQPVLDEISAPIYTNYPALPEGSKTAHQFLTKLMGSMTWVQARFVSDRPVPVDKNNT
CCCCCCHHHHCCCCCEECCCCCCCCCHHHHHHHHHHHHHHHHHHHEECCCCCCCCCCCCC
SEPKETAKVLAQLARESDQEILLESAYLIFDDSQLEEWQELSNKGVKIKALTNSMASNDL
CCHHHHHHHHHHHHHCCCHHHHHHHEEEEEECHHHHHHHHHHCCCEEEEEECCHHCCCCC
TTNHSGYAGRRQDMLEHGIQLFELKPETGLCEDSTRDVSKCAPTLAYGLHAKSAVFDRKI
CCCCCCCCCHHHHHHHCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHH
ASIGSFNFNLRSTYLNTESILIIENQKIAERLADDIEQAMDEENSWHLKLQDGDIRWYSG
HHHCCCCCEEEEEEECCCEEEEEECHHHHHHHHHHHHHHHCCCCCEEEEEECCEEEEECC
DKSWESEPETGRWERFESRFLQLLPIEKYL
CCCCCCCCCCCHHHHHHHHHHHHCCHHHCC
>Mature Secondary Structure 
SVLQRIHITLFFVAILSGCGSLPDEVEHTNEPVANSVISPLSELRDAYQPSTSTQETSA
CHHHHHHHHHHHHHHHHHCCCCCHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHC
VLPQDAGWDALAQRLALIETAEHTIDIQYYIWNSDTSGHYLASRLLAAADRGVKVRVMLD
CCCCCCCHHHHHHHHHHHHHHCCEEEEEEEEECCCCCHHHHHHHHHHHHCCCEEEEEEEE
DINLNEREDLLIALNSHPQVDIRIFNPIPTRRGVTKWVNFLGDFSRLNRRMHNKSFTVDG
CCCCCCCCCEEEEECCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHCCCCEEECC
AFSVVGGRNIGDEYFDLSDDINFRDRDVLVTGDVVGEIQTSFTEYWDSRWSYPVDLLGGK
CEEEECCCCCCHHHCCCCCCCCCCCCEEEEECHHHHHHHHHHHHHHHCCCCCCHHCCCCC
TSPDQPVLDEISAPIYTNYPALPEGSKTAHQFLTKLMGSMTWVQARFVSDRPVPVDKNNT
CCCCCCHHHHCCCCCEECCCCCCCCCHHHHHHHHHHHHHHHHHHHEECCCCCCCCCCCCC
SEPKETAKVLAQLARESDQEILLESAYLIFDDSQLEEWQELSNKGVKIKALTNSMASNDL
CCHHHHHHHHHHHHHCCCHHHHHHHEEEEEECHHHHHHHHHHCCCEEEEEECCHHCCCCC
TTNHSGYAGRRQDMLEHGIQLFELKPETGLCEDSTRDVSKCAPTLAYGLHAKSAVFDRKI
CCCCCCCCCHHHHHHHCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHH
ASIGSFNFNLRSTYLNTESILIIENQKIAERLADDIEQAMDEENSWHLKLQDGDIRWYSG
HHHCCCCCEEEEEEECCCEEEEEECHHHHHHHHHHHHHHHCCCCCEEEEEECCEEEEECC
DKSWESEPETGRWERFESRFLQLLPIEKYL
CCCCCCCCCCCHHHHHHHHHHHHCCHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503 [H]