Click here to switch to the map view.

The map label for this gene is yccA [H]

Identifier: 209695500

GI number: 209695500

Start: 2200109

End: 2200771

Strand: Reverse

Name: yccA [H]

Synonym: VSAL_I2053

Alternate gene names: 209695500

Gene position: 2200771-2200109 (Counterclockwise)

Preceding gene: 209695501

Following gene: 209695499

Centisome position: 66.19

GC content: 39.67

Gene sequence:

>663_bases
ATGAATAATCAAATGTTCGGCCAAACTCGCACACAAGAGTCGGCTCTACAAACGAATAAAGTATTACGTAATACTTACTT
CTTACTGTCTATGACATTACTATGGTCAGCATTGGTTGCTGGCGTATCAATGGCTCTGAACTTACCTCGTCCAGGTATTA
TCATTATGCTAGTTGGTTTCTACGGTCTATTGTACTTAACAGAAAAGAACCGTAACAACAGCATGGGTCTTCTATTTACA
TTCCTATTTACTGGCTTCTTAGGCTACACCATTGGTCCAATTCTAAACATGTACATTGGTGCAGGAATGGGCGATGTTAT
CCTAACGGCTCTTGGCGGTACTGCACTGTCATTCATGGCAGCATCAGCGTATGCCTTAACAACTAAACGTGATTTATCAT
TCCTTAACGGTGTAATGATGGCTGGTTTTGTTGTTCTACTCATTGGTATGGTTGCGAATATCTTCCTACAAATGCCTCTG
TTGCATCTTGTAATGAGTGGTATGTTCATCTTGTTTTCTACTGGTGCAATTCTGTTAACAACACAATCAATCATCCGTGG
TGGCGAAACAAGCTACATCTCAGCAACGATTACATTATATGTATCAATCTACAATATCTTCATCAGCCTACTAAGTATTC
TTGGTATCATGCGTGACGATTAA

Upstream 100 bases:

>100_bases
CAACTAATTCAGTTCAAAAAACAGAACTACCTTGATTTTTTGAACTATAGGCATCATAACTGTCTATATATTTATGTCTG
TCCATTCCAAGGGGAATACG

Downstream 100 bases:

>100_bases
TCGATAACATTTGAAACATTAGCTAATTCGATACAATAAATTAGATGATTTTTTCACTACTGTATTGGCATTATCAGAAC
ACTCTAAGCACTAATCGGTG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 220; Mature: 220

Protein sequence:

>220_residues
MNNQMFGQTRTQESALQTNKVLRNTYFLLSMTLLWSALVAGVSMALNLPRPGIIIMLVGFYGLLYLTEKNRNNSMGLLFT
FLFTGFLGYTIGPILNMYIGAGMGDVILTALGGTALSFMAASAYALTTKRDLSFLNGVMMAGFVVLLIGMVANIFLQMPL
LHLVMSGMFILFSTGAILLTTQSIIRGGETSYISATITLYVSIYNIFISLLSILGIMRDD

Sequences:

>Translated_220_residues
MNNQMFGQTRTQESALQTNKVLRNTYFLLSMTLLWSALVAGVSMALNLPRPGIIIMLVGFYGLLYLTEKNRNNSMGLLFT
FLFTGFLGYTIGPILNMYIGAGMGDVILTALGGTALSFMAASAYALTTKRDLSFLNGVMMAGFVVLLIGMVANIFLQMPL
LHLVMSGMFILFSTGAILLTTQSIIRGGETSYISATITLYVSIYNIFISLLSILGIMRDD
>Mature_220_residues
MNNQMFGQTRTQESALQTNKVLRNTYFLLSMTLLWSALVAGVSMALNLPRPGIIIMLVGFYGLLYLTEKNRNNSMGLLFT
FLFTGFLGYTIGPILNMYIGAGMGDVILTALGGTALSFMAASAYALTTKRDLSFLNGVMMAGFVVLLIGMVANIFLQMPL
LHLVMSGMFILFSTGAILLTTQSIIRGGETSYISATITLYVSIYNIFISLLSILGIMRDD

Specific function: Unknown

COG id: COG0670

COG function: function code R; Integral membrane protein, interacts with FtsH

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the BI1 family [H]

Homologues:

Organism=Escherichia coli, GI1787205, Length=218, Percent_Identity=61.0091743119266, Blast_Score=262, Evalue=1e-71,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006213
- InterPro:   IPR006214 [H]

Pfam domain/function: PF01027 UPF0005 [H]

EC number: NA

Molecular weight: Translated: 23998; Mature: 23998

Theoretical pI: Translated: 9.54; Mature: 9.54

Prosite motif: PS01243 BI1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
7.3 %Met     (Translated Protein)
7.3 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
7.3 %Met     (Mature Protein)
7.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNNQMFGQTRTQESALQTNKVLRNTYFLLSMTLLWSALVAGVSMALNLPRPGIIIMLVGF
CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHH
YGLLYLTEKNRNNSMGLLFTFLFTGFLGYTIGPILNMYIGAGMGDVILTALGGTALSFMA
HHHHEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
ASAYALTTKRDLSFLNGVMMAGFVVLLIGMVANIFLQMPLLHLVMSGMFILFSTGAILLT
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHEE
TQSIIRGGETSYISATITLYVSIYNIFISLLSILGIMRDD
HHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MNNQMFGQTRTQESALQTNKVLRNTYFLLSMTLLWSALVAGVSMALNLPRPGIIIMLVGF
CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHH
YGLLYLTEKNRNNSMGLLFTFLFTGFLGYTIGPILNMYIGAGMGDVILTALGGTALSFMA
HHHHEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
ASAYALTTKRDLSFLNGVMMAGFVVLLIGMVANIFLQMPLLHLVMSGMFILFSTGAILLT
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHEE
TQSIIRGGETSYISATITLYVSIYNIFISLLSILGIMRDD
HHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 12471157 [H]