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The map label for this gene is torD

Identifier: 209695443

GI number: 209695443

Start: 2125988

End: 2126635

Strand: Reverse

Name: torD

Synonym: VSAL_I1984

Alternate gene names: 209695443

Gene position: 2126635-2125988 (Counterclockwise)

Preceding gene: 209695450

Following gene: 209695442

Centisome position: 63.96

GC content: 38.12

Gene sequence:

>648_bases
ATGAACGAACTAAATGCATTTAATGAACAACGTGCTGAAATTTATTGGTGGTTATCTAGCCTATTTGCACACGAGCTAAC
TAAAGAGCAATTAGAGCAGTATAACAGTTTTGAGATTCGTACCTTTTTAACGAACCTTTCTGAAACTCCAGAGCTAACCG
ACTCTATTTCTTCAATTGTAACAAAATTGAATGAATTACAAACACGCGAAGATGCACAGCTTGAACTATCGGCTGACTTC
TGTGAAGCGTTCTTAGGCTCTGATAAGAACAGTGCGCTTCCTTATGCTTCAATGTATTTAGATAAATCACGCCTTCTTAA
TGCGAAACCAGCACAAGATATGCGTGATTTATTAGAAAAATACAACATCACTCAAAAAGCTGAATTCAATGAACCTGCGG
ATCACATTGCTATTGAGTTAGATTTCTTAGGCAATCTAATTGTCATGACGAATCAGCAAACAACGGAACCAGAATTCGAG
CAATTCATGGCCGCACAACTGCAATTTATTAACGAACAGTTATTATCTTGGGCGCCACGTTTTAACCAACTTTGTTCTGA
ACGAGATACATTTGGCTTCTATGCTGCCGTTACTCACTTCCTTGTTACGTTCTTAGAATTGGATGTAAAATTCCTAGCGG
GCGAATAA

Upstream 100 bases:

>100_bases
CTTTGCTAATATCTTTATACACCCTGTTAATGATAGGTGCTATTCCTTTTCACACTTATGCCGTACAATTATTTAGTCAA
TTTTTTGGAGCTTATTTTAC

Downstream 100 bases:

>100_bases
CAAAAGCATGTACAACTGGTAAGATAAGTTAACAATAGTGTGATATATGTCAAAACGACTATTAAAATTTATTAAATCAG
CAATTGTTTGCGCTACGCTT

Product: chaperone protein TorD

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 215; Mature: 215

Protein sequence:

>215_residues
MNELNAFNEQRAEIYWWLSSLFAHELTKEQLEQYNSFEIRTFLTNLSETPELTDSISSIVTKLNELQTREDAQLELSADF
CEAFLGSDKNSALPYASMYLDKSRLLNAKPAQDMRDLLEKYNITQKAEFNEPADHIAIELDFLGNLIVMTNQQTTEPEFE
QFMAAQLQFINEQLLSWAPRFNQLCSERDTFGFYAAVTHFLVTFLELDVKFLAGE

Sequences:

>Translated_215_residues
MNELNAFNEQRAEIYWWLSSLFAHELTKEQLEQYNSFEIRTFLTNLSETPELTDSISSIVTKLNELQTREDAQLELSADF
CEAFLGSDKNSALPYASMYLDKSRLLNAKPAQDMRDLLEKYNITQKAEFNEPADHIAIELDFLGNLIVMTNQQTTEPEFE
QFMAAQLQFINEQLLSWAPRFNQLCSERDTFGFYAAVTHFLVTFLELDVKFLAGE
>Mature_215_residues
MNELNAFNEQRAEIYWWLSSLFAHELTKEQLEQYNSFEIRTFLTNLSETPELTDSISSIVTKLNELQTREDAQLELSADF
CEAFLGSDKNSALPYASMYLDKSRLLNAKPAQDMRDLLEKYNITQKAEFNEPADHIAIELDFLGNLIVMTNQQTTEPEFE
QFMAAQLQFINEQLLSWAPRFNQLCSERDTFGFYAAVTHFLVTFLELDVKFLAGE

Specific function: Involved in the biogenesis of torA. Acts on torA before the insertion of the molybdenum cofactor and, as a result, probably favors a conformation of the apoenzyme that is competent for acquiring the cofactor

COG id: COG3381

COG function: function code R; Uncharacterized component of anaerobic dehydrogenases

Gene ontology:

Cell location: Cytoplasm

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the torD/dmsD family. TorD subfamily

Homologues:

Organism=Escherichia coli, GI1787232, Length=212, Percent_Identity=35.377358490566, Blast_Score=125, Evalue=2e-30,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): TORD_ALISL (B6EH87)

Other databases:

- EMBL:   FM178379
- RefSeq:   YP_002263372.1
- ProteinModelPortal:   B6EH87
- GeneID:   6989044
- GenomeReviews:   FM178379_GR
- KEGG:   vsa:VSAL_I1984
- HOGENOM:   HBG662677
- OMA:   EPADHIA
- ProtClustDB:   PRK04976
- GO:   GO:0005737
- HAMAP:   MF_01150
- InterPro:   IPR023069
- InterPro:   IPR020945

Pfam domain/function: PF02613 Nitrate_red_del

EC number: NA

Molecular weight: Translated: 24911; Mature: 24911

Theoretical pI: Translated: 4.07; Mature: 4.07

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNELNAFNEQRAEIYWWLSSLFAHELTKEQLEQYNSFEIRTFLTNLSETPELTDSISSIV
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCHHHHHHHHHHH
TKLNELQTREDAQLELSADFCEAFLGSDKNSALPYASMYLDKSRLLNAKPAQDMRDLLEK
HHHHHHHCCCCCCEEECHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHH
YNITQKAEFNEPADHIAIELDFLGNLIVMTNQQTTEPEFEQFMAAQLQFINEQLLSWAPR
CCCCCCCCCCCCHHHEEEEHHHHCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHCHH
FNQLCSERDTFGFYAAVTHFLVTFLELDVKFLAGE
HHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MNELNAFNEQRAEIYWWLSSLFAHELTKEQLEQYNSFEIRTFLTNLSETPELTDSISSIV
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCHHHHHHHHHHH
TKLNELQTREDAQLELSADFCEAFLGSDKNSALPYASMYLDKSRLLNAKPAQDMRDLLEK
HHHHHHHCCCCCCEEECHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHH
YNITQKAEFNEPADHIAIELDFLGNLIVMTNQQTTEPEFEQFMAAQLQFINEQLLSWAPR
CCCCCCCCCCCCHHHEEEEHHHHCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHCHH
FNQLCSERDTFGFYAAVTHFLVTFLELDVKFLAGE
HHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA