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The map label for this gene is tfoX [H]

Identifier: 209695441

GI number: 209695441

Start: 2123700

End: 2124287

Strand: Reverse

Name: tfoX [H]

Synonym: VSAL_I1982

Alternate gene names: 209695441

Gene position: 2124287-2123700 (Counterclockwise)

Preceding gene: 209695442

Following gene: 209695440

Centisome position: 63.89

GC content: 36.56

Gene sequence:

>588_bases
ATGGATAAACCAATACTAAAAGATTCACTTCGATTACTTTCCTCTCTAGGAAAAATCACTTCACGCTCCATGTTTGGCGG
CTTTGGTGTTTTTATTGATGACACAATGTTTGCACTTGTTGTTCAGGACAGACTGCATTTGCGAGCAAGCGATAACACTA
TTAATTTATTTAAAGACCAAGGTTTTGAACCTTACGTTTATAAAAAACGTGGTTTCCCCGTGGTAACTAAATATTTTGCT
ATTTCACCTGAATGTTGGGATGAACCTGATTCAATCCTAATTCAAGCTGTTGTTGCTTTAGATGTTGCTAAAAAAGACAA
AGAAAAACAAAAAACAGCAGGTCCCTCTCGAATTAAGGATTTACCCAATCTAAGATTAGCGACAGAGAGAATGCTGAAAA
AAGCAGGAATAACGACCGTAAAAGAATTAATGGACACGGGATCTGTAAACGCTTATAAAGCGATTCAACAGACTCATTCA
AGTTCTGTTAGTGACGAACTACTGTGGTCGCTTGAAGGAGCGATTAAAGGTACTCACTGGTCTGTTATCTCTACTGATAT
TAGAAATGAATTAAGAAAACAACTTTAA

Upstream 100 bases:

>100_bases
ATTTTTACTTAGAAATAACAATGTGTGGTTTTGAACTTGCTACTATTTCCTCGGGCTCAGTTGTTTAGTGACATAGACTT
ACTAACCGAGAATTATTGCA

Downstream 100 bases:

>100_bases
ATACATTTTCCTACATTTATTTTACATTCGCCCTACTCTTATGTTGTCTTTACCTGTATAAATTAAAGACAACATAAGGC
TAGGAAATGAATTATGAATA

Product: DNA transformation protein TfoX

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 195; Mature: 195

Protein sequence:

>195_residues
MDKPILKDSLRLLSSLGKITSRSMFGGFGVFIDDTMFALVVQDRLHLRASDNTINLFKDQGFEPYVYKKRGFPVVTKYFA
ISPECWDEPDSILIQAVVALDVAKKDKEKQKTAGPSRIKDLPNLRLATERMLKKAGITTVKELMDTGSVNAYKAIQQTHS
SSVSDELLWSLEGAIKGTHWSVISTDIRNELRKQL

Sequences:

>Translated_195_residues
MDKPILKDSLRLLSSLGKITSRSMFGGFGVFIDDTMFALVVQDRLHLRASDNTINLFKDQGFEPYVYKKRGFPVVTKYFA
ISPECWDEPDSILIQAVVALDVAKKDKEKQKTAGPSRIKDLPNLRLATERMLKKAGITTVKELMDTGSVNAYKAIQQTHS
SSVSDELLWSLEGAIKGTHWSVISTDIRNELRKQL
>Mature_195_residues
MDKPILKDSLRLLSSLGKITSRSMFGGFGVFIDDTMFALVVQDRLHLRASDNTINLFKDQGFEPYVYKKRGFPVVTKYFA
ISPECWDEPDSILIQAVVALDVAKKDKEKQKTAGPSRIKDLPNLRLATERMLKKAGITTVKELMDTGSVNAYKAIQQTHS
SSVSDELLWSLEGAIKGTHWSVISTDIRNELRKQL

Specific function: Unknown

COG id: COG3070

COG function: function code K; Regulator of competence-specific genes

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: To H.influenzae DNA transformation protein tfoX [H]

Homologues:

Organism=Escherichia coli, GI1787193, Length=179, Percent_Identity=32.4022346368715, Blast_Score=94, Evalue=5e-21,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR007077
- InterPro:   IPR007076 [H]

Pfam domain/function: PF04994 TfoX_C; PF04993 TfoX_N [H]

EC number: NA

Molecular weight: Translated: 21921; Mature: 21921

Theoretical pI: Translated: 9.80; Mature: 9.80

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDKPILKDSLRLLSSLGKITSRSMFGGFGVFIDDTMFALVVQDRLHLRASDNTINLFKDQ
CCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHEEECCCEEEEHHCC
GFEPYVYKKRGFPVVTKYFAISPECWDEPDSILIQAVVALDVAKKDKEKQKTAGPSRIKD
CCCCEEEECCCCCEEHHHEEECCHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHH
LPNLRLATERMLKKAGITTVKELMDTGSVNAYKAIQQTHSSSVSDELLWSLEGAIKGTHW
CCCCHHHHHHHHHHCCHHHHHHHHHCCCCHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCH
SVISTDIRNELRKQL
HHHHHHHHHHHHHCC
>Mature Secondary Structure
MDKPILKDSLRLLSSLGKITSRSMFGGFGVFIDDTMFALVVQDRLHLRASDNTINLFKDQ
CCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHEEECCCEEEEHHCC
GFEPYVYKKRGFPVVTKYFAISPECWDEPDSILIQAVVALDVAKKDKEKQKTAGPSRIKD
CCCCEEEECCCCCEEHHHEEECCHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHH
LPNLRLATERMLKKAGITTVKELMDTGSVNAYKAIQQTHSSSVSDELLWSLEGAIKGTHW
CCCCHHHHHHHHHHCCHHHHHHHHHCCCCHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCH
SVISTDIRNELRKQL
HHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503 [H]