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The map label for this gene is ydjX [C]

Identifier: 209695440

GI number: 209695440

Start: 2122929

End: 2123606

Strand: Reverse

Name: ydjX [C]

Synonym: VSAL_I1981

Alternate gene names: 209695440

Gene position: 2123606-2122929 (Counterclockwise)

Preceding gene: 209695441

Following gene: 209695439

Centisome position: 63.86

GC content: 36.87

Gene sequence:

>678_bases
ATGAATAAAAAATTACTCTTATTAATCACTCTTCTTACAGCCTTTGCTGTTATCTTTTTTAACTTTGGTCATCTATTTAC
TCTAGAGCAGGCTAAGGCATACCATCAAGCCCTTCAAAGTGACATCCAAGAAAACCTTTTCTTTTATAGCGCCCTTTATT
TCTTTGGTTACATTACCGTCACGGCATTATCAATACCAGGCGCCGCAGTAGTCACATTACTTGGCGCGGCCTTATTTGGT
TTTTGGTGGAGCTTATTGTTGGTTTCTTTTGCCAGTTCCATTGGTGCTACTATTGCCTTCCTAAGCAGCCGTTATTTATT
AAGAGAATGGGTTGATCGTAAATTTGGGGACAAATTAATTTCCATCAATCAAGGTATTGAAAAAGATGGCGCTTTTTACT
TACTGACTCTTCGTTTAATTCCTATATTTCCATTCTTTCTTATTAATTTAGTCATGGGATTAACAAAACTAACCGCCGCT
CGGTTTTACTTATTTAGTCAATTAGGCATGCTGCCCGGAACCATGGTATTTTTAAATGCCGGAACTCAATTAGCTGAAAT
AACCTCACTATCAGGGTTAATATCACCAAATATACTCGGCTCTCTTGCTCTTCTTGGTTTATTTCCAATCGTTGCAAAAT
TTATTATTAGTTATGTTCGGAAAAAACGCACCTCTTAA

Upstream 100 bases:

>100_bases
ACTTTAAATACATTTTCCTACATTTATTTTACATTCGCCCTACTCTTATGTTGTCTTTACCTGTATAAATTAAAGACAAC
ATAAGGCTAGGAAATGAATT

Downstream 100 bases:

>100_bases
AATAACGAATAAGAGATAGACATTATTCTGTCTCTTATCCCTTCTCTCACTGATTACCTGCAGGATTCATTTTACGTTCA
TGTTTAATAATTTATACTGC

Product: membrane protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 225; Mature: 225

Protein sequence:

>225_residues
MNKKLLLLITLLTAFAVIFFNFGHLFTLEQAKAYHQALQSDIQENLFFYSALYFFGYITVTALSIPGAAVVTLLGAALFG
FWWSLLLVSFASSIGATIAFLSSRYLLREWVDRKFGDKLISINQGIEKDGAFYLLTLRLIPIFPFFLINLVMGLTKLTAA
RFYLFSQLGMLPGTMVFLNAGTQLAEITSLSGLISPNILGSLALLGLFPIVAKFIISYVRKKRTS

Sequences:

>Translated_225_residues
MNKKLLLLITLLTAFAVIFFNFGHLFTLEQAKAYHQALQSDIQENLFFYSALYFFGYITVTALSIPGAAVVTLLGAALFG
FWWSLLLVSFASSIGATIAFLSSRYLLREWVDRKFGDKLISINQGIEKDGAFYLLTLRLIPIFPFFLINLVMGLTKLTAA
RFYLFSQLGMLPGTMVFLNAGTQLAEITSLSGLISPNILGSLALLGLFPIVAKFIISYVRKKRTS
>Mature_225_residues
MNKKLLLLITLLTAFAVIFFNFGHLFTLEQAKAYHQALQSDIQENLFFYSALYFFGYITVTALSIPGAAVVTLLGAALFG
FWWSLLLVSFASSIGATIAFLSSRYLLREWVDRKFGDKLISINQGIEKDGAFYLLTLRLIPIFPFFLINLVMGLTKLTAA
RFYLFSQLGMLPGTMVFLNAGTQLAEITSLSGLISPNILGSLALLGLFPIVAKFIISYVRKKRTS

Specific function: Unknown

COG id: COG0398

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the TVP38/TMEM64 family [H]

Homologues:

Organism=Homo sapiens, GI66392190, Length=228, Percent_Identity=25.4385964912281, Blast_Score=68, Evalue=5e-12,
Organism=Homo sapiens, GI18087813, Length=206, Percent_Identity=27.1844660194175, Blast_Score=67, Evalue=2e-11,
Organism=Escherichia coli, GI87081964, Length=151, Percent_Identity=31.1258278145695, Blast_Score=70, Evalue=1e-13,
Organism=Escherichia coli, GI1788049, Length=166, Percent_Identity=30.7228915662651, Blast_Score=62, Evalue=3e-11,
Organism=Caenorhabditis elegans, GI17532687, Length=193, Percent_Identity=27.979274611399, Blast_Score=70, Evalue=8e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR015414 [H]

Pfam domain/function: PF09335 SNARE_assoc [H]

EC number: NA

Molecular weight: Translated: 25021; Mature: 25021

Theoretical pI: Translated: 10.26; Mature: 10.26

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
1.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNKKLLLLITLLTAFAVIFFNFGHLFTLEQAKAYHQALQSDIQENLFFYSALYFFGYITV
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
TALSIPGAAVVTLLGAALFGFWWSLLLVSFASSIGATIAFLSSRYLLREWVDRKFGDKLI
HHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH
SINQGIEKDGAFYLLTLRLIPIFPFFLINLVMGLTKLTAARFYLFSQLGMLPGTMVFLNA
HHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHEEEEC
GTQLAEITSLSGLISPNILGSLALLGLFPIVAKFIISYVRKKRTS
CCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MNKKLLLLITLLTAFAVIFFNFGHLFTLEQAKAYHQALQSDIQENLFFYSALYFFGYITV
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
TALSIPGAAVVTLLGAALFGFWWSLLLVSFASSIGATIAFLSSRYLLREWVDRKFGDKLI
HHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH
SINQGIEKDGAFYLLTLRLIPIFPFFLINLVMGLTKLTAARFYLFSQLGMLPGTMVFLNA
HHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHEEEEC
GTQLAEITSLSGLISPNILGSLALLGLFPIVAKFIISYVRKKRTS
CCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8590279; 8905231 [H]