| Definition | Aliivibrio salmonicida LFI1238 chromosome 1, complete genome. |
|---|---|
| Accession | NC_011312 |
| Length | 3,325,165 |
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The map label for this gene is 209695388
Identifier: 209695388
GI number: 209695388
Start: 2056403
End: 2058628
Strand: Reverse
Name: 209695388
Synonym: VSAL_I1922
Alternate gene names: NA
Gene position: 2058628-2056403 (Counterclockwise)
Preceding gene: 209695389
Following gene: 209695387
Centisome position: 61.91
GC content: 27.18
Gene sequence:
>2226_bases ATGTTATCTAAATTATACTATTTACTACTTATAACTTATATTTATATTTCTCCAACTACAGTTGTGAATGCAGCTGCTAC ATGTGGGTCGTGGAATGACTATCAAAACTGTATTGATGATAGGCCAAGGCCACCTAGTGGCGTCGATCAAGGAACATATT CAAAAAAAAGAAAAAACATTTTCAAATCAGATATAATAAAACCATTCAATGATTATAAAATTCAATATAAAAAGATGTCA GATGATAATAATTCTGTCTTAAATAACGATATTAATAATATTGAAAATATTTTCATAAAGCACTTTAATATATTAAACAC ATGGGCATATAACTATCCTGACAGCTTTAATCTATATTTTAACAATAAAGATATAGATCATGTTATAAATGATGAAATTG AATTAAATTCTACAGTATTAAATGAACTTATACGTGGTTCTGTTGAGCGAGCTATTCATCGTTATTCAAACTTAAATAAA ACAGTAATTAATAGTATTCATTTTCACTATTGGGCAAAAGCATATGCTCCATTTATCTCTGGCATTTGGGGCTTTGAATC AGAATGGTCTTATAGTGATAGAATTGATGAGCATGATAATTATTATATAATTACTGAAAGTACAGAAGATAATTCAGATA TAAAAGAAATTAAATATACCGATTTGTGGAATAATGCCGCAACAGGACCAACAACAAAATCACAAACGCGTTATATATCT TTACAACCGAATGAAGATTATATAAATGAAGTAAAAAAATCAATTATAGATAAGGCTCCTCAAAAGATTTCTATTTTAAA TAATGAAATGAATGAAGTTGATTATATTTCAAAAGTAATAAATTTTGATTATGAAATAATCGCATTATTATCAATTAATT TCAATTTAGAATTTAAAGATCAAATATTAAAAACAAACAGCTCAGACTTCATAAAAAATAAAAGTAGATTTTTAAATGAA AATTTATATAAAGAAAAAAATACAGCACTATTATTTACATTCCCATTAATTAATCATTTAATTAACAACAATCAAGACCA AAATTACATGGAAGAAATAAAATATACATTATTAAAAATACAAGATAACACTTGGTTTTCACAGTTGCCTGATGATAACA TTTATAAGAAATTGATAAAAAGCATATTAAATGATGATAGTAAAGACACAATTCTAAGACTTTCCACTTCTAACGAATTT TTAAAGTATCAAATAGATGAAATAGGAATAAACATCACCGATTGGGGGATTAATTTGGACGAAGGTGATATTGTACCATA TTATAAAAATGATGAAATTCAATTATTTAAATCAAAATTTCATGGAAACGCAGCTAATAATAATTGGTATTTTCCAACAA ATCATAAATCTAATGAAAGATGGGAATACTTAGGTATATTTATAACTAAAAATAATTATATAAATTATATAAGAAAACTA AATATTTCATCTGAATGGAATGATTTCACATTCCCTGGTGACATTCATTACTATAATGGTATGTATTTTTCACCAACATT CATAGGAAAAGCTAATGAAAATAATTATTACTACCCTACAACAAAGGAAAATAACGAACATTGGATATATATAGGTAGCG ATGATAAACCATCTCCATTTTTTTACCATTACATACAGTATACTTTAAAACATTATGCTAATCGATTGCAATACAATAAC CTTAGCATTAATAATGCAAGTAATAGTGATATAAATAAAAAAATACGCAATAAATTTCATGAACATTTAAGCGCCTTTTT TGAGAGTGACTATAATACTAACAAATACCACGCTTTTTCAGCTATCGATCCTTCATTTACAATGATACTACACAACCAAT ATGATTGGATAATTAAACGACTGACGACTTGGAATGACTGGATGGATGAACATTATCAACATCTTGTAGATATAAATGAT GGATTCCAGCCAAGTGATGCAGAAATAATGGAGCACTGGATTAATGAGCAATGGGATGCACCTGAAGAATTTAGGGAATG GTGGTTAGATACCTCATCTTATTTTGAAACTGATTCACCCAGTGAAGTAATAAGGCAGTTAAATATTTTTGAACAAGTGG AAGAGTTAGATGAAGCATCCGTTGAGTTGACTAATGGGACGATGATAACGTTAATTAACAGTATGAATATTTCAGAAATT GCTAATGTAGCTACAGCTTCTACTATAACAATATCAACTATTTTACCAATGTTCATTTTCTTATAA
Upstream 100 bases:
>100_bases TAGCAAGTAATTTAACAAGACCAGGAAGAGTACTCAATAGAAGAGTGGAAATTAAACTTATTAAACTTATTAAACTTATT AAAAATACTGAGAGGTAATT
Downstream 100 bases:
>100_bases ATTAGTAAACCGTTATTTAAAAACACATAGAAAATTAAATTTAAGGCTGAGAATTCATCAACTTAGCCTTTTTCCGTAAC CTATAAATAAAACTATCCAT
Product: phage protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 741; Mature: 741
Protein sequence:
>741_residues MLSKLYYLLLITYIYISPTTVVNAAATCGSWNDYQNCIDDRPRPPSGVDQGTYSKKRKNIFKSDIIKPFNDYKIQYKKMS DDNNSVLNNDINNIENIFIKHFNILNTWAYNYPDSFNLYFNNKDIDHVINDEIELNSTVLNELIRGSVERAIHRYSNLNK TVINSIHFHYWAKAYAPFISGIWGFESEWSYSDRIDEHDNYYIITESTEDNSDIKEIKYTDLWNNAATGPTTKSQTRYIS LQPNEDYINEVKKSIIDKAPQKISILNNEMNEVDYISKVINFDYEIIALLSINFNLEFKDQILKTNSSDFIKNKSRFLNE NLYKEKNTALLFTFPLINHLINNNQDQNYMEEIKYTLLKIQDNTWFSQLPDDNIYKKLIKSILNDDSKDTILRLSTSNEF LKYQIDEIGINITDWGINLDEGDIVPYYKNDEIQLFKSKFHGNAANNNWYFPTNHKSNERWEYLGIFITKNNYINYIRKL NISSEWNDFTFPGDIHYYNGMYFSPTFIGKANENNYYYPTTKENNEHWIYIGSDDKPSPFFYHYIQYTLKHYANRLQYNN LSINNASNSDINKKIRNKFHEHLSAFFESDYNTNKYHAFSAIDPSFTMILHNQYDWIIKRLTTWNDWMDEHYQHLVDIND GFQPSDAEIMEHWINEQWDAPEEFREWWLDTSSYFETDSPSEVIRQLNIFEQVEELDEASVELTNGTMITLINSMNISEI ANVATASTITISTILPMFIFL
Sequences:
>Translated_741_residues MLSKLYYLLLITYIYISPTTVVNAAATCGSWNDYQNCIDDRPRPPSGVDQGTYSKKRKNIFKSDIIKPFNDYKIQYKKMS DDNNSVLNNDINNIENIFIKHFNILNTWAYNYPDSFNLYFNNKDIDHVINDEIELNSTVLNELIRGSVERAIHRYSNLNK TVINSIHFHYWAKAYAPFISGIWGFESEWSYSDRIDEHDNYYIITESTEDNSDIKEIKYTDLWNNAATGPTTKSQTRYIS LQPNEDYINEVKKSIIDKAPQKISILNNEMNEVDYISKVINFDYEIIALLSINFNLEFKDQILKTNSSDFIKNKSRFLNE NLYKEKNTALLFTFPLINHLINNNQDQNYMEEIKYTLLKIQDNTWFSQLPDDNIYKKLIKSILNDDSKDTILRLSTSNEF LKYQIDEIGINITDWGINLDEGDIVPYYKNDEIQLFKSKFHGNAANNNWYFPTNHKSNERWEYLGIFITKNNYINYIRKL NISSEWNDFTFPGDIHYYNGMYFSPTFIGKANENNYYYPTTKENNEHWIYIGSDDKPSPFFYHYIQYTLKHYANRLQYNN LSINNASNSDINKKIRNKFHEHLSAFFESDYNTNKYHAFSAIDPSFTMILHNQYDWIIKRLTTWNDWMDEHYQHLVDIND GFQPSDAEIMEHWINEQWDAPEEFREWWLDTSSYFETDSPSEVIRQLNIFEQVEELDEASVELTNGTMITLINSMNISEI ANVATASTITISTILPMFIFL >Mature_741_residues MLSKLYYLLLITYIYISPTTVVNAAATCGSWNDYQNCIDDRPRPPSGVDQGTYSKKRKNIFKSDIIKPFNDYKIQYKKMS DDNNSVLNNDINNIENIFIKHFNILNTWAYNYPDSFNLYFNNKDIDHVINDEIELNSTVLNELIRGSVERAIHRYSNLNK TVINSIHFHYWAKAYAPFISGIWGFESEWSYSDRIDEHDNYYIITESTEDNSDIKEIKYTDLWNNAATGPTTKSQTRYIS LQPNEDYINEVKKSIIDKAPQKISILNNEMNEVDYISKVINFDYEIIALLSINFNLEFKDQILKTNSSDFIKNKSRFLNE NLYKEKNTALLFTFPLINHLINNNQDQNYMEEIKYTLLKIQDNTWFSQLPDDNIYKKLIKSILNDDSKDTILRLSTSNEF LKYQIDEIGINITDWGINLDEGDIVPYYKNDEIQLFKSKFHGNAANNNWYFPTNHKSNERWEYLGIFITKNNYINYIRKL NISSEWNDFTFPGDIHYYNGMYFSPTFIGKANENNYYYPTTKENNEHWIYIGSDDKPSPFFYHYIQYTLKHYANRLQYNN LSINNASNSDINKKIRNKFHEHLSAFFESDYNTNKYHAFSAIDPSFTMILHNQYDWIIKRLTTWNDWMDEHYQHLVDIND GFQPSDAEIMEHWINEQWDAPEEFREWWLDTSSYFETDSPSEVIRQLNIFEQVEELDEASVELTNGTMITLINSMNISEI ANVATASTITISTILPMFIFL
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 87704; Mature: 87704
Theoretical pI: Translated: 4.72; Mature: 4.72
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 1.5 %Met (Translated Protein) 1.8 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 1.5 %Met (Mature Protein) 1.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLSKLYYLLLITYIYISPTTVVNAAATCGSWNDYQNCIDDRPRPPSGVDQGTYSKKRKNI CCHHHHHHHHHHHHHCCCHHHHHHHHHCCCCHHHHHHHCCCCCCCCCCCCCCHHHHHHHH FKSDIIKPFNDYKIQYKKMSDDNNSVLNNDINNIENIFIKHFNILNTWAYNYPDSFNLYF HHHHHCCCCCCCEEEEEEECCCCCCHHHCCHHHHHHHHHHHHHHHHHEECCCCCCEEEEE NNKDIDHVINDEIELNSTVLNELIRGSVERAIHRYSNLNKTVINSIHFHYWAKAYAPFIS CCCCHHHHHCCCEEECHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH GIWGFESEWSYSDRIDEHDNYYIITESTEDNSDIKEIKYTDLWNNAATGPTTKSQTRYIS HHCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCHHHEEEEECCCCCCCCCCCCCCEEEEE LQPNEDYINEVKKSIIDKAPQKISILNNEMNEVDYISKVINFDYEIIALLSINFNLEFKD ECCCHHHHHHHHHHHHHCCCCCEEHHHCCHHHHHHHHHHHCCCEEEEEEEEEECCCEEHH QILKTNSSDFIKNKSRFLNENLYKEKNTALLFTFPLINHLINNNQDQNYMEEIKYTLLKI HHHHCCCHHHHHHHHHHHHHHHHCCCCCEEEEEHHHHHHHHCCCCCHHHHHHHHEEEEEE QDNTWFSQLPDDNIYKKLIKSILNDDSKDTILRLSTSNEFLKYQIDEIGINITDWGINLD ECCCHHHCCCCCHHHHHHHHHHHCCCCCCEEEEEECCCCEEEEEHHHCCEEEEECCCCCC EGDIVPYYKNDEIQLFKSKFHGNAANNNWYFPTNHKSNERWEYLGIFITKNNYINYIRKL CCCEECEEECCCHHEEHHHHCCCCCCCCCCCCCCCCCCCCEEEEEEEEECCCCEEEHHEE NISSEWNDFTFPGDIHYYNGMYFSPTFIGKANENNYYYPTTKENNEHWIYIGSDDKPSPF CCCCCCCCCCCCCCEEEECCEEECCEEEECCCCCCEECCCCCCCCCEEEEECCCCCCCCH FYHYIQYTLKHYANRLQYNNLSINNASNSDINKKIRNKFHEHLSAFFESDYNTNKYHAFS HHHHHHHHHHHHHHHHEECCEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEE AIDPSFTMILHNQYDWIIKRLTTWNDWMDEHYQHLVDINDGFQPSDAEIMEHWINEQWDA ECCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHEECCCCCCCCHHHHHHHHHCCCCCC PEEFREWWLDTSSYFETDSPSEVIRQLNIFEQVEELDEASVELTNGTMITLINSMNISEI HHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCEEEECCEEEEEEECCCHHHH ANVATASTITISTILPMFIFL HHHHHHHHHHHHHHHHHHHHC >Mature Secondary Structure MLSKLYYLLLITYIYISPTTVVNAAATCGSWNDYQNCIDDRPRPPSGVDQGTYSKKRKNI CCHHHHHHHHHHHHHCCCHHHHHHHHHCCCCHHHHHHHCCCCCCCCCCCCCCHHHHHHHH FKSDIIKPFNDYKIQYKKMSDDNNSVLNNDINNIENIFIKHFNILNTWAYNYPDSFNLYF HHHHHCCCCCCCEEEEEEECCCCCCHHHCCHHHHHHHHHHHHHHHHHEECCCCCCEEEEE NNKDIDHVINDEIELNSTVLNELIRGSVERAIHRYSNLNKTVINSIHFHYWAKAYAPFIS CCCCHHHHHCCCEEECHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH GIWGFESEWSYSDRIDEHDNYYIITESTEDNSDIKEIKYTDLWNNAATGPTTKSQTRYIS HHCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCHHHEEEEECCCCCCCCCCCCCCEEEEE LQPNEDYINEVKKSIIDKAPQKISILNNEMNEVDYISKVINFDYEIIALLSINFNLEFKD ECCCHHHHHHHHHHHHHCCCCCEEHHHCCHHHHHHHHHHHCCCEEEEEEEEEECCCEEHH QILKTNSSDFIKNKSRFLNENLYKEKNTALLFTFPLINHLINNNQDQNYMEEIKYTLLKI HHHHCCCHHHHHHHHHHHHHHHHCCCCCEEEEEHHHHHHHHCCCCCHHHHHHHHEEEEEE QDNTWFSQLPDDNIYKKLIKSILNDDSKDTILRLSTSNEFLKYQIDEIGINITDWGINLD ECCCHHHCCCCCHHHHHHHHHHHCCCCCCEEEEEECCCCEEEEEHHHCCEEEEECCCCCC EGDIVPYYKNDEIQLFKSKFHGNAANNNWYFPTNHKSNERWEYLGIFITKNNYINYIRKL CCCEECEEECCCHHEEHHHHCCCCCCCCCCCCCCCCCCCCEEEEEEEEECCCCEEEHHEE NISSEWNDFTFPGDIHYYNGMYFSPTFIGKANENNYYYPTTKENNEHWIYIGSDDKPSPF CCCCCCCCCCCCCCEEEECCEEECCEEEECCCCCCEECCCCCCCCCEEEEECCCCCCCCH FYHYIQYTLKHYANRLQYNNLSINNASNSDINKKIRNKFHEHLSAFFESDYNTNKYHAFS HHHHHHHHHHHHHHHHEECCEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEE AIDPSFTMILHNQYDWIIKRLTTWNDWMDEHYQHLVDINDGFQPSDAEIMEHWINEQWDA ECCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHEECCCCCCCCHHHHHHHHHCCCCCC PEEFREWWLDTSSYFETDSPSEVIRQLNIFEQVEELDEASVELTNGTMITLINSMNISEI HHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCEEEECCEEEEEEECCCHHHH ANVATASTITISTILPMFIFL HHHHHHHHHHHHHHHHHHHHC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA