Definition Aliivibrio salmonicida LFI1238 chromosome 1, complete genome.
Accession NC_011312
Length 3,325,165

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The map label for this gene is 209695387

Identifier: 209695387

GI number: 209695387

Start: 2055011

End: 2055976

Strand: Reverse

Name: 209695387

Synonym: VSAL_I1921

Alternate gene names: NA

Gene position: 2055976-2055011 (Counterclockwise)

Preceding gene: 209695388

Following gene: 209695386

Centisome position: 61.83

GC content: 32.61

Gene sequence:

>966_bases
ATGAAAAAAATATTTTTACTTATTTCAGGAACCTTATTTTCATTTTTCACATTCAATGCAAATGCAACTTTCTCTATAGT
CGCTTATGACGAAATTAGTGGATATTATGGTGCAGCATTTGCTAGTTGTGTATTTTTACCTCCTGAGACGGATATCACTG
AATACGTTAATGCCATAACACCTATAGGTACAATTACAACACAAGCAACAGTTAACTACGACAATATAAATTTGAAAAAT
GGAAAAGATCAAATTATCGATAATGTTAGAGGAAATCAAATTCTTGAGTGGCTTCATGATCAAGATGGCGAATTTGAGAA
TAAATCTCGACAGTATCTAATACTAAATAACCCGTCTTCAGGTCCTGTAGAAGGTTTTGCATATACTGGTACTGAAGTAC
CTTCTGATAAAGGATCGATTATCAACAAAAATGTTGTTATTGCTGGTAATACTTTATTTCCCAACACATTACAAACCATG
TATGAAGGTTACACACAAGAACAAGATTTTTTCATTGAAAAACTATTAAAAAGCCTTACTAATGTGCGAGATAACTCTCT
AGGTGACATAAGATGTGATGGAGTATCTTCCTATACTGCATTTATTAAAGTTAATGATAAGCATTGGTTTTATAATTCAG
ATAATTTAAATGAAGATGCAATAGATGGTTTAGAAAAAATAATTAACGATAGACAAAAACCTAAAGTTTGCCTTTCACTA
ATATCTGGTACAGCTTTTCTTGCAAATATTGATATAAAAGGAAATGGCGAATATTCAGGACCTTACGGCGTAGGGAGCTC
CATTTGTTCTGATGGTAAGTCGGGAGACATTTTCTATCCTCAATTTAATGTTGTAGCAGGTGTACACAAATCTTGTGGGA
CTATTGAAATAAAAGAAGATTCTGGCATTATAAATTATGATGCATGGGGAACAACGCTTTCTCCTCATTGTGTTAGAAGA
GATTAA

Upstream 100 bases:

>100_bases
CTAGCATTAATATTATTTGTTTTACTAGTTTAAACCTAAGTGGTTTTATAGATAGTGATTTAATCATTCATGCTAAATAA
CCTCACATTAAGGATATATT

Downstream 100 bases:

>100_bases
AAATTTATAAATAACCTTAGGGCATTAATCATTATCTATGATTCGTGCCCTCATTAATAATCTTATACTAGAATTAAATT
CAGCGAACTCATCTGCATTA

Product: membrane protein, phage gene

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 321; Mature: 321

Protein sequence:

>321_residues
MKKIFLLISGTLFSFFTFNANATFSIVAYDEISGYYGAAFASCVFLPPETDITEYVNAITPIGTITTQATVNYDNINLKN
GKDQIIDNVRGNQILEWLHDQDGEFENKSRQYLILNNPSSGPVEGFAYTGTEVPSDKGSIINKNVVIAGNTLFPNTLQTM
YEGYTQEQDFFIEKLLKSLTNVRDNSLGDIRCDGVSSYTAFIKVNDKHWFYNSDNLNEDAIDGLEKIINDRQKPKVCLSL
ISGTAFLANIDIKGNGEYSGPYGVGSSICSDGKSGDIFYPQFNVVAGVHKSCGTIEIKEDSGIINYDAWGTTLSPHCVRR
D

Sequences:

>Translated_321_residues
MKKIFLLISGTLFSFFTFNANATFSIVAYDEISGYYGAAFASCVFLPPETDITEYVNAITPIGTITTQATVNYDNINLKN
GKDQIIDNVRGNQILEWLHDQDGEFENKSRQYLILNNPSSGPVEGFAYTGTEVPSDKGSIINKNVVIAGNTLFPNTLQTM
YEGYTQEQDFFIEKLLKSLTNVRDNSLGDIRCDGVSSYTAFIKVNDKHWFYNSDNLNEDAIDGLEKIINDRQKPKVCLSL
ISGTAFLANIDIKGNGEYSGPYGVGSSICSDGKSGDIFYPQFNVVAGVHKSCGTIEIKEDSGIINYDAWGTTLSPHCVRR
D
>Mature_321_residues
MKKIFLLISGTLFSFFTFNANATFSIVAYDEISGYYGAAFASCVFLPPETDITEYVNAITPIGTITTQATVNYDNINLKN
GKDQIIDNVRGNQILEWLHDQDGEFENKSRQYLILNNPSSGPVEGFAYTGTEVPSDKGSIINKNVVIAGNTLFPNTLQTM
YEGYTQEQDFFIEKLLKSLTNVRDNSLGDIRCDGVSSYTAFIKVNDKHWFYNSDNLNEDAIDGLEKIINDRQKPKVCLSL
ISGTAFLANIDIKGNGEYSGPYGVGSSICSDGKSGDIFYPQFNVVAGVHKSCGTIEIKEDSGIINYDAWGTTLSPHCVRR
D

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 35452; Mature: 35452

Theoretical pI: Translated: 4.46; Mature: 4.46

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
0.6 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
0.6 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKIFLLISGTLFSFFTFNANATFSIVAYDEISGYYGAAFASCVFLPPETDITEYVNAIT
CCEEEEEEECCEEEEEEECCCCEEEEEEEECCCCHHCCHHHEEEEECCCCCHHHHHHHHC
PIGTITTQATVNYDNINLKNGKDQIIDNVRGNQILEWLHDQDGEFENKSRQYLILNNPSS
CCCEEEEEEEEEECCEEECCCHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCEEEEECCCC
GPVEGFAYTGTEVPSDKGSIINKNVVIAGNTLFPNTLQTMYEGYTQEQDFFIEKLLKSLT
CCCCCEEEECCCCCCCCCCEEECCEEEECCCCCCHHHHHHHCCCCCCHHHHHHHHHHHHH
NVRDNSLGDIRCDGVSSYTAFIKVNDKHWFYNSDNLNEDAIDGLEKIINDRQKPKVCLSL
CCCCCCCCCEEECCCCCEEEEEEECCCEEEECCCCCCHHHHHHHHHHHCCCCCHHHHHHH
ISGTAFLANIDIKGNGEYSGPYGVGSSICSDGKSGDIFYPQFNVVAGVHKSCGTIEIKED
HCCCEEEEEEEEECCCCCCCCCCCCHHHHCCCCCCCEECCCHHHHHHHHCCCCEEEEECC
SGIINYDAWGTTLSPHCVRRD
CCEEEECCCCCCCCCCCCCCC
>Mature Secondary Structure
MKKIFLLISGTLFSFFTFNANATFSIVAYDEISGYYGAAFASCVFLPPETDITEYVNAIT
CCEEEEEEECCEEEEEEECCCCEEEEEEEECCCCHHCCHHHEEEEECCCCCHHHHHHHHC
PIGTITTQATVNYDNINLKNGKDQIIDNVRGNQILEWLHDQDGEFENKSRQYLILNNPSS
CCCEEEEEEEEEECCEEECCCHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCEEEEECCCC
GPVEGFAYTGTEVPSDKGSIINKNVVIAGNTLFPNTLQTMYEGYTQEQDFFIEKLLKSLT
CCCCCEEEECCCCCCCCCCEEECCEEEECCCCCCHHHHHHHCCCCCCHHHHHHHHHHHHH
NVRDNSLGDIRCDGVSSYTAFIKVNDKHWFYNSDNLNEDAIDGLEKIINDRQKPKVCLSL
CCCCCCCCCEEECCCCCEEEEEEECCCEEEECCCCCCHHHHHHHHHHHCCCCCHHHHHHH
ISGTAFLANIDIKGNGEYSGPYGVGSSICSDGKSGDIFYPQFNVVAGVHKSCGTIEIKED
HCCCEEEEEEEEECCCCCCCCCCCCHHHHCCCCCCCEECCCHHHHHHHHCCCCEEEEECC
SGIINYDAWGTTLSPHCVRRD
CCEEEECCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA